Geospatial distribution of viromes in tropical freshwater ecosystems

Xiaoqiong Gu, Qi Xiang Martin Tay, Shu Harn Te, Nazanin Saeidi, Shin Giek Goh, Ariel Kushmaro, Janelle R. Thompson, Karina Yew Hoong Gin

פרסום מחקרי: פרסום בכתב עתמאמרביקורת עמיתים

תקציר

This study seeks to understand the general distribution of virome abundance and diversity in tropical freshwater ecosystems in Singapore and the geospatial distribution of the virome under different landuse patterns. Correlations between diversity, environmental parameters and land use patterns were analyzed and significant correlations were highlighted. Overall, the majority (65.5%) of the annotated virome belonged to bacteriophages. The percentage of Caudovirales was higher in reservoirs whereas the percentages of Dicistroviridae, Microviridae and Circoviridae were higher in tributaries. Reservoirs showed a higher Shannon-index virome diversity compared to upstream tributaries. Land use (urbanized, agriculture and parkland areas) influenced the characteristics of the virome distribution pattern. Dicistroviridae and Microviridae were enriched in urbanized tributaries while Mimiviridae, Phycodnaviridae, Siphoviridae and Podoviridae were enriched in parkland reservoirs. Several sequences closely related to the emerging zoonotic virus, cyclovirus, and the human-related virus (human picobirnavirus), were also detected. In addition, the relative abundance of PMMoV (pepper mild mottle virus) sequences was significantly correlated with RT-qPCR measurements (0.588 < r < 0.879, p < 0.05). This study shows that spatial factors (e.g., reservoirs/tributaries, land use) are the main drivers of the viral community structure in tropical freshwater ecosystems.

שפה מקוריתאנגלית אמריקאית
עמודים (מ-עד)220-232
מספר עמודים13
כתב עתWater Research
כרך137
מזהי עצם דיגיטלי (DOIs)
סטטוס פרסוםפורסם - 15 יוני 2018
פורסם באופן חיצוניכן

ASJC Scopus subject areas

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  • ???subjectarea.asjc.2300.2311???
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טביעת אצבע

להלן מוצגים תחומי המחקר של הפרסום 'Geospatial distribution of viromes in tropical freshwater ecosystems'. יחד הם יוצרים טביעת אצבע ייחודית.

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