Upgrade of D+ software for hierarchical modeling of X-ray scattering data from complex structures in solution, fibers and single orientations

Eytan Balken, Itai Ben-Nun, Amos Fellig, Daniel Khaykelson, Uri Raviv, J. Ilavsky

Research output: Contribution to journalArticlepeer-review

Abstract

This article presents an upgrade of the D+ software [Ginsburg et al. (2019). J. Appl. Cryst. 52, 219-242], expanding its hierarchical solution X-ray scattering modeling capabilities for fiber diffraction and single crystallographic orientations. This upgrade was carried out using the reciprocal grid algorithm [Ginsburg et al. (2016). J. Chem. Inf. Model. 56, 1518-1527], providing D+ its computational strength. Furthermore, the extensive modifications made to the Python API of D+ are described, broadening the X-ray analysis performed with D+ to account for the effects of the instrument-resolution function and polydispersity. In addition, structure-factor and radial-distribution-function modules were added, taking into account the effects of thermal fluctuations and intermolecular interactions. Finally, numerical examples demonstrate the usage and potential of the added features.
Original languageEnglish
Pages (from-to)1295-1303
Number of pages9
JournalJournal of Applied Crystallography
Volume56
Early online date28 Jul 2023
DOIs
StatePublished - Aug 2023

Keywords

  • D+ software
  • X-ray scattering
  • fiber diffraction
  • hierarchical modeling
  • orientations
  • polydispersity
  • structure factors

All Science Journal Classification (ASJC) codes

  • General Biochemistry,Genetics and Molecular Biology

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