@article{999a4753163c43828d6bc6598e2cd70a,
title = "TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data [version 1; peer review: 1 approved, 1 approved with reservations]",
abstract = "The GDC (Genomic Data Commons) data portal provides users with data from cancer genomics studies. Recently, we developed the R/Bioconductor TCGAbiolinks package, which allows users to search, download and prepare cancer genomics data for integrative data analysis. The use of this package requires users to have advanced knowledge of R thus limiting the number of users. To overcome this obstacle and improve the accessibility of the package by a wider range of users, we developed a graphical user interface (GUI) using Shiny available through the package TCGAbiolinksGUI. The TCGAbiolinksGUI package is freely available within the Bioconductor project at http://bioconductor.org/packages/TCGAbiolinksGUI/. Links to the GitHub repository, a demo version of the tool, a docker image and PDF/video tutorials are available from the TCGAbiolinksGUI site.",
keywords = "Bioinformatics, Cancer, Epigenomics, Genomics, TCGA",
author = "Silva, {Tiago Chedraoui} and Antonio Colaprico and Catharina Olsen and Malta, {Tathiane M.} and Gianluca Bontempi and Michele Ceccarelli and Berman, {Benjamin P.} and Houtan Noushmehr",
note = "Funding Information: This work has been supported by a grant from Henry Ford Hospital (H.N.) and by the S{\~a}o Paulo Research Foundation (FAPESP) (2016/01389-7 to T.C.S. & H.N. and 2015/07925-5 to H.N.) the BridgeIRIS project, funded by INNOVIRIS, Region de Bruxelles Capitale, Brussels, Belgium, and by GENomic profiling of Gastrointestinal Inflammatory-Sensitive CANcers (GENGISCAN), Belgian FNRS PDR (T100914F to A.C., C.O.& G.B.). T.C.S. and B.P.B. were supported by the NCI Informatics Technology for Cancer Research program, NIH/NCI grant 1U01CA184826 and Genomic Data Analysis Network NIH/NCI grant 1U24CA210969. Funding Information: This work has been supported by a grant from Henry Ford Hospital (H.N.) and by the S?o Paulo Research Foundation (FAPESP) (2016/01389-7 to T.C.S. & H.N. and 2015/07925-5 to H.N.) the BridgeIRIS project, funded by INNOVIRIS, Region de Bruxelles Capitale, Brussels, Belgium, and by GENomic profiling of Gastrointestinal Inflammatory-Sensitive CANcers (GENGISCAN), Belgian FNRS PDR (T100914F to A.C., C.O.& G.B.). T.C.S. and B.P.B. were supported by the NCI Informatics Technology for Cancer Research program, NIH/NCI grant 1U01CA184826 and Genomic Data Analysis Network NIH/NCI grant 1U24CA210969. Funding Information: Grant information: This work has been supported by a grant from Henry Ford Hospital (H.N.) and by the S{\~a}o Paulo Research Foundation (FAPESP) (2016/01389-7 to T.C.S. & H.N. and 2015/07925-5 to H.N.) the BridgeIRIS project, funded by INNOVIRIS, Region de Bruxelles Capitale, Brussels, Belgium, and by GENomic profiling of Gastrointestinal Inflammatory-Sensitive CANcers (GENGISCAN), Belgian FNRS PDR (T100914F to A.C., C.O.& G.B.). T.C.S. and B.P.B. were supported by the NCI Informatics Technology for Cancer Research program, NIH/NCI grant 1U01CA184826 and Genomic Data Analysis Network NIH/NCI grant 1U24CA210969 Publisher Copyright: {\textcopyright} 2018 Silva TC et al.",
year = "2018",
doi = "https://doi.org/10.12688/F1000RESEARCH.14197.1",
language = "American English",
volume = "7",
journal = "F1000Research",
issn = "2046-1402",
publisher = "F1000 Research Ltd.",
}