TY - JOUR
T1 - Sensitivity enhancement of homonuclear multidimensional NMR correlations for labile sites in proteins, polysaccharides, and nucleic acids
AU - Novakovic, Mihajlo
AU - Kupče, Ēriks
AU - Oxenfarth, Andreas
AU - Battistel, Marcos D.
AU - Freedberg, Darón I.
AU - Schwalbe, Harald
AU - Frydman, Lucio
N1 - We are grateful to professor D. Fass (Weizmann Institute) for the LA5 sample and to Dr. Tali Scherf (Weizmann Institute) for the assistance in the GHz experiments. This work was supported by the Kimmel Institute for Magnetic Resonance (Weizmann Institute), the EU Horizon 2020 program (FET-OPEN Grant 828946, PATHOS), Israel Science Foundation Grant 965/18, and the Perlman Family Foundation. H.S. was supported by DFG-funded collaborative research center 902. Work at BMRZ is supported by the state of Hesse. Joint support to L.F., H.S. was given by the German-Israel Foundation (grant G-1501-302). We wish to thank Boris Fürtig, Robbin Schnieders, and Christian Richter for stimulating discussions. Contributions - M.N., E.K., and L.F. conceived the project. M.N., E.K., and L.F. implemented the method. M.N. carried out the NMR measurements and the spin simulations. M.N. and E.K. processed the data. M.N., A.O., H.S., and L.F. conceived the nucleic acids applications and evaluated their NMR data. M.N., M.D.B., D.F., and L.F. conceived the oligosaccharide applications and evaluated their NMR data. M.N. and L.F. wrote the paper. All authors contributed to the discussions leading to the final manuscript. Publisher Copyright: © 2020, The Author(s). Copyright: Copyright 2020 Elsevier B.V., All rights reserved.
PY - 2020/10/21
Y1 - 2020/10/21
N2 - Multidimensional TOCSY and NOESY are central experiments in chemical and biophysical NMR. Limited efficiencies are an intrinsic downside of these methods, particularly when targeting labile sites. This study demonstrates that the decoherence imparted on these protons through solvent exchanges can, when suitably manipulated, lead to dramatic sensitivity gains per unit time in the acquisition of these experiments. To achieve this, a priori selected frequencies are encoded according to Hadamard recipes, while concurrently subject to looped selective inversion or selective saturation procedures. Suitable processing then leads to protein, oligosaccharide and nucleic acid cross-peak enhancements of ≈200–1000% per scan, in measurements that are ≈10-fold faster than conventional counterparts. The extent of these gains will depend on the solvent exchange and relaxation rates of the targeted sites; these gains also benefit considerably from the spectral resolution provided by ultrahigh fields, as corroborated by NMR experiments at 600 MHz and 1 GHz. The mechanisms underlying these experiments’ enhanced efficiencies are analyzed on the basis of three-way polarization transfer interplays between the water, labile and non-labile protons, and the experimental results are rationalized using both analytical and numerical derivations. Limitations as well as further extensions of the proposed methods, are also discussed.
AB - Multidimensional TOCSY and NOESY are central experiments in chemical and biophysical NMR. Limited efficiencies are an intrinsic downside of these methods, particularly when targeting labile sites. This study demonstrates that the decoherence imparted on these protons through solvent exchanges can, when suitably manipulated, lead to dramatic sensitivity gains per unit time in the acquisition of these experiments. To achieve this, a priori selected frequencies are encoded according to Hadamard recipes, while concurrently subject to looped selective inversion or selective saturation procedures. Suitable processing then leads to protein, oligosaccharide and nucleic acid cross-peak enhancements of ≈200–1000% per scan, in measurements that are ≈10-fold faster than conventional counterparts. The extent of these gains will depend on the solvent exchange and relaxation rates of the targeted sites; these gains also benefit considerably from the spectral resolution provided by ultrahigh fields, as corroborated by NMR experiments at 600 MHz and 1 GHz. The mechanisms underlying these experiments’ enhanced efficiencies are analyzed on the basis of three-way polarization transfer interplays between the water, labile and non-labile protons, and the experimental results are rationalized using both analytical and numerical derivations. Limitations as well as further extensions of the proposed methods, are also discussed.
UR - http://www.scopus.com/inward/record.url?scp=85093855042&partnerID=8YFLogxK
U2 - 10.1038/s41467-020-19108-x
DO - 10.1038/s41467-020-19108-x
M3 - مقالة
C2 - 33087707
SN - 2041-1723
VL - 11
JO - Nature Communications
JF - Nature Communications
IS - 1
M1 - 5317
ER -