TY - JOUR
T1 - Order and Disorder in Calcium Oxalate Monohydrate
T2 - Insights from First-Principles Calculations
AU - Shepelenko, Margarita
AU - Feldman, Yishay
AU - Leiserowitz, Leslie
AU - Kronik, Leeor
N1 - We thank Ms. Marina Sandler and Ms. Anna Ilionski at the Weizmann Institute Library and Ms. Tatyana Seryogina at the Vernadsky National Library of Ukraine, for their invaluable help with our literature survey. We thank Dr. Thomas Blanton from the International Centre for Diffraction Data for help with reviewing powder diffraction files, Dr. Gregory Leitus and Dr. Linda J. W. Shimon at the Weizmann Institute for help with X-ray diffraction analysis, and Prof. Irit Sagi, Dr. Inna Solomonov, and Prof. Michael Ward for fruitful discussions. L.K. is the incumbent of the Aryeh and Mintzi Katzman Professorial Chair.
PY - 2020/2/5
Y1 - 2020/2/5
N2 - Calcium oxalate minerals are broadly present in nature. They form through biogenic, geogenic, and pathogenic processes that lead to different pseudopolymorphs. Being the most common solid phase in human nephrolithiasis, calcium oxalate monohydrate (COM) in particular has been the focus of much investigation. It exists in several crystalline forms, two of which appear to be of biological and medical relevance: the low- and high-temperature forms (COM-LT and COM-HT, respectively). While there is broad consensus on the ordered structure of COM-LT, which possesses the P2(1)/n space group symmetry, for COM-HT controversy remains. Experimental results suggest that there is a certain degree of structural disorder in the high-temperature form. However, the exact character of disorder in COM-HT is yet an open question. Here, we examine the effect of the disorder of water molecules on the structure of COM using first-principles calculations based on dispersion-augmented density functional theory. Such calculations allow for controlled examination of specific disorder features and their effect on crystal structure and stability. On the basis of our first-principles analysis, we suggest that in COM-HT each water dimer site is randomly occupied by any of four water dimer arrangements present in COM-LT, leading to statistical 2/m point symmetry at each site and a statistical I2/m space group symmetry.
AB - Calcium oxalate minerals are broadly present in nature. They form through biogenic, geogenic, and pathogenic processes that lead to different pseudopolymorphs. Being the most common solid phase in human nephrolithiasis, calcium oxalate monohydrate (COM) in particular has been the focus of much investigation. It exists in several crystalline forms, two of which appear to be of biological and medical relevance: the low- and high-temperature forms (COM-LT and COM-HT, respectively). While there is broad consensus on the ordered structure of COM-LT, which possesses the P2(1)/n space group symmetry, for COM-HT controversy remains. Experimental results suggest that there is a certain degree of structural disorder in the high-temperature form. However, the exact character of disorder in COM-HT is yet an open question. Here, we examine the effect of the disorder of water molecules on the structure of COM using first-principles calculations based on dispersion-augmented density functional theory. Such calculations allow for controlled examination of specific disorder features and their effect on crystal structure and stability. On the basis of our first-principles analysis, we suggest that in COM-HT each water dimer site is randomly occupied by any of four water dimer arrangements present in COM-LT, leading to statistical 2/m point symmetry at each site and a statistical I2/m space group symmetry.
U2 - https://doi.org/10.1021/acs.cgd.9b01245
DO - https://doi.org/10.1021/acs.cgd.9b01245
M3 - مقالة
SN - 1528-7483
VL - 20
SP - 858
EP - 865
JO - Crystal Growth & Design
JF - Crystal Growth & Design
IS - 2
ER -