Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems

Fabien Lombard; Guillaume Bourdin; Stéphane Pesant; Sylvain Agostini; Alberto Baudena; Emilie Boissin; Nicolas Cassar; Megan Clampitt; Pascal Conan; Ophélie Da Silva; Céline Dimier; Eric Douville; Amanda Elineau; Jonathan Fin; J. Michel Flores; Jean François Ghiglione; Benjamin C.C. Hume; Laetitia Jalabert; Seth G. John; Rachel L. Kelly; Ilan Koren; Yajuan Lin; Dominique Marie; Ryan McMinds; Zoé Mériguet; Nicolas Metzl; David A. Paz-García; Maria Luiza Pedrotti; Julie Poulain; Mireille Pujo-Pay; Joséphine Ras; Gilles Reverdin; Sarah Romac; Alice Rouan; Eric Röttinger; Assaf Vardi; Christian R. Voolstra; Clémentine Moulin; Guillaume Iwankow; Bernard Banaigs; Chris Bowler; Colomban de Vargas; Didier Forcioli; Paola Furla; Pierre E. Galand; Eric Gilson; Stéphanie Reynaud; Shinichi Sunagawa; Matthew B. Sullivan; Olivier P. Thomas; Romain Troublé; Rebecca Vega Thurber; Patrick Wincker; Didier Zoccola; Denis Allemand; Serge Planes; Emmanuel Boss; Gaby Gorsky

doi:10.1038/s41597-022-01757-w

Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems

Fabien Lombard, Guillaume Bourdin, Stéphane Pesant, Sylvain Agostini, Alberto Baudena, Emilie Boissin, Nicolas Cassar, Megan Clampitt, Pascal Conan, Ophélie Da Silva, Céline Dimier, Eric Douville, Amanda Elineau, Jonathan Fin, J. Michel Flores, Jean François Ghiglione, Benjamin C.C. Hume, Laetitia Jalabert, Seth G. John, Rachel L. KellyIlan Koren, Yajuan Lin, Dominique Marie, Ryan McMinds, Zoé Mériguet, Nicolas Metzl, David A. Paz-García, Maria Luiza Pedrotti, Julie Poulain, Mireille Pujo-Pay, Joséphine Ras, Gilles Reverdin, Sarah Romac, Alice Rouan, Eric Röttinger, Assaf Vardi, Christian R. Voolstra, Clémentine Moulin, Guillaume Iwankow, Bernard Banaigs, Chris Bowler, Colomban de Vargas, Didier Forcioli, Paola Furla, Pierre E. Galand, Eric Gilson, Stéphanie Reynaud, Shinichi Sunagawa, Matthew B. Sullivan, Olivier P. Thomas, Romain Troublé, Rebecca Vega Thurber, Patrick Wincker, Didier Zoccola, Denis Allemand, Serge Planes, Emmanuel Boss, Gaby Gorsky

Weizmann Institute of Science

Research output: Contribution to journal › Article › peer-review

Abstract

The Tara Pacific expedition (2016–2018) sampled coral ecosystems around 32 islands in the Pacific Ocean and the ocean surface waters at 249 locations, resulting in the collection of nearly 58 000 samples. The expedition was designed to systematically study warm-water coral reefs and included the collection of corals, fish, plankton, and seawater samples for advanced biogeochemical, molecular, and imaging analysis. Here we provide a complete description of the sampling methodology, and we explain how to explore and access the different datasets generated by the expedition. Environmental context data were obtained from taxonomic registries, gazetteers, almanacs, climatologies, operational biogeochemical models, and satellite observations. The quality of the different environmental measures has been validated not only by various quality control steps, but also through a global analysis allowing the comparison with known environmental large-scale structures. Such publicly released datasets open the perspective to address a wide range of scientific questions.

Original language	English
Article number	324
Journal	Scientific data
Volume	10
DOIs	https://doi.org/10.1038/s41597-022-01757-w
State	Published Online - 1 Jun 2023

All Science Journal Classification (ASJC) codes

Statistics and Probability
Information Systems
Education
Computer Science Applications
Statistics, Probability and Uncertainty
Library and Information Sciences

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10.1038/s41597-022-01757-wLicense: CC BY

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Lombard, F., Bourdin, G., Pesant, S., Agostini, S., Baudena, A., Boissin, E., Cassar, N., Clampitt, M., Conan, P., Da Silva, O., Dimier, C., Douville, E., Elineau, A., Fin, J., Flores, J. M., Ghiglione, J. F., Hume, B. C. C., Jalabert, L., John, S. G., ... Gorsky, G. (2023). Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems. Scientific data, 10, Article 324. Advance online publication. https://doi.org/10.1038/s41597-022-01757-w

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title = "Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems",

abstract = "The Tara Pacific expedition (2016–2018) sampled coral ecosystems around 32 islands in the Pacific Ocean and the ocean surface waters at 249 locations, resulting in the collection of nearly 58 000 samples. The expedition was designed to systematically study warm-water coral reefs and included the collection of corals, fish, plankton, and seawater samples for advanced biogeochemical, molecular, and imaging analysis. Here we provide a complete description of the sampling methodology, and we explain how to explore and access the different datasets generated by the expedition. Environmental context data were obtained from taxonomic registries, gazetteers, almanacs, climatologies, operational biogeochemical models, and satellite observations. The quality of the different environmental measures has been validated not only by various quality control steps, but also through a global analysis allowing the comparison with known environmental large-scale structures. Such publicly released datasets open the perspective to address a wide range of scientific questions.",

author = "Fabien Lombard and Guillaume Bourdin and St{\'e}phane Pesant and Sylvain Agostini and Alberto Baudena and Emilie Boissin and Nicolas Cassar and Megan Clampitt and Pascal Conan and {Da Silva}, Oph{\'e}lie and C{\'e}line Dimier and Eric Douville and Amanda Elineau and Jonathan Fin and Flores, {J. Michel} and Ghiglione, {Jean Fran{\c c}ois} and Hume, {Benjamin C.C.} and Laetitia Jalabert and John, {Seth G.} and Kelly, {Rachel L.} and Ilan Koren and Yajuan Lin and Dominique Marie and Ryan McMinds and Zo{\'e} M{\'e}riguet and Nicolas Metzl and Paz-Garc{\'i}a, {David A.} and Pedrotti, {Maria Luiza} and Julie Poulain and Mireille Pujo-Pay and Jos{\'e}phine Ras and Gilles Reverdin and Sarah Romac and Alice Rouan and Eric R{\"o}ttinger and Assaf Vardi and Voolstra, {Christian R.} and Cl{\'e}mentine Moulin and Guillaume Iwankow and Bernard Banaigs and Chris Bowler and {de Vargas}, Colomban and Didier Forcioli and Paola Furla and Galand, {Pierre E.} and Eric Gilson and St{\'e}phanie Reynaud and Shinichi Sunagawa and Sullivan, {Matthew B.} and Thomas, {Olivier P.} and Romain Troubl{\'e} and Thurber, {Rebecca Vega} and Patrick Wincker and Didier Zoccola and Denis Allemand and Serge Planes and Emmanuel Boss and Gaby Gorsky",

note = "Publisher Copyright: {\textcopyright} 2022, The Author(s).",

year = "2023",

month = jun,

day = "1",

doi = "10.1038/s41597-022-01757-w",

language = "الإنجليزيّة",

volume = "10",

journal = "Scientific data",

issn = "2052-4463",

publisher = "Nature Research",

}

Lombard, F, Bourdin, G, Pesant, S, Agostini, S, Baudena, A, Boissin, E, Cassar, N, Clampitt, M, Conan, P, Da Silva, O, Dimier, C, Douville, E, Elineau, A, Fin, J, Flores, JM, Ghiglione, JF, Hume, BCC, Jalabert, L, John, SG, Kelly, RL, Koren, I, Lin, Y, Marie, D, McMinds, R, Mériguet, Z, Metzl, N, Paz-García, DA, Pedrotti, ML, Poulain, J, Pujo-Pay, M, Ras, J, Reverdin, G, Romac, S, Rouan, A, Röttinger, E, Vardi, A, Voolstra, CR, Moulin, C, Iwankow, G, Banaigs, B, Bowler, C, de Vargas, C, Forcioli, D, Furla, P, Galand, PE, Gilson, E, Reynaud, S, Sunagawa, S, Sullivan, MB, Thomas, OP, Troublé, R, Thurber, RV, Wincker, P, Zoccola, D, Allemand, D, Planes, S, Boss, E & Gorsky, G 2023, 'Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems', Scientific data, vol. 10, 324. https://doi.org/10.1038/s41597-022-01757-w

TY - JOUR

T1 - Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems

AU - Lombard, Fabien

AU - Bourdin, Guillaume

AU - Pesant, Stéphane

AU - Agostini, Sylvain

AU - Baudena, Alberto

AU - Boissin, Emilie

AU - Cassar, Nicolas

AU - Clampitt, Megan

AU - Conan, Pascal

AU - Da Silva, Ophélie

AU - Dimier, Céline

AU - Douville, Eric

AU - Elineau, Amanda

AU - Fin, Jonathan

AU - Flores, J. Michel

AU - Ghiglione, Jean François

AU - Hume, Benjamin C.C.

AU - Jalabert, Laetitia

AU - John, Seth G.

AU - Kelly, Rachel L.

AU - Koren, Ilan

AU - Lin, Yajuan

AU - Marie, Dominique

AU - McMinds, Ryan

AU - Mériguet, Zoé

AU - Metzl, Nicolas

AU - Paz-García, David A.

AU - Pedrotti, Maria Luiza

AU - Poulain, Julie

AU - Pujo-Pay, Mireille

AU - Ras, Joséphine

AU - Reverdin, Gilles

AU - Romac, Sarah

AU - Rouan, Alice

AU - Röttinger, Eric

AU - Vardi, Assaf

AU - Voolstra, Christian R.

AU - Moulin, Clémentine

AU - Iwankow, Guillaume

AU - Banaigs, Bernard

AU - Bowler, Chris

AU - de Vargas, Colomban

AU - Forcioli, Didier

AU - Furla, Paola

AU - Galand, Pierre E.

AU - Gilson, Eric

AU - Reynaud, Stéphanie

AU - Sunagawa, Shinichi

AU - Sullivan, Matthew B.

AU - Thomas, Olivier P.

AU - Troublé, Romain

AU - Thurber, Rebecca Vega

AU - Wincker, Patrick

AU - Zoccola, Didier

AU - Allemand, Denis

AU - Planes, Serge

AU - Boss, Emmanuel

AU - Gorsky, Gaby

PY - 2023/6/1

Y1 - 2023/6/1

N2 - The Tara Pacific expedition (2016–2018) sampled coral ecosystems around 32 islands in the Pacific Ocean and the ocean surface waters at 249 locations, resulting in the collection of nearly 58 000 samples. The expedition was designed to systematically study warm-water coral reefs and included the collection of corals, fish, plankton, and seawater samples for advanced biogeochemical, molecular, and imaging analysis. Here we provide a complete description of the sampling methodology, and we explain how to explore and access the different datasets generated by the expedition. Environmental context data were obtained from taxonomic registries, gazetteers, almanacs, climatologies, operational biogeochemical models, and satellite observations. The quality of the different environmental measures has been validated not only by various quality control steps, but also through a global analysis allowing the comparison with known environmental large-scale structures. Such publicly released datasets open the perspective to address a wide range of scientific questions.

AB - The Tara Pacific expedition (2016–2018) sampled coral ecosystems around 32 islands in the Pacific Ocean and the ocean surface waters at 249 locations, resulting in the collection of nearly 58 000 samples. The expedition was designed to systematically study warm-water coral reefs and included the collection of corals, fish, plankton, and seawater samples for advanced biogeochemical, molecular, and imaging analysis. Here we provide a complete description of the sampling methodology, and we explain how to explore and access the different datasets generated by the expedition. Environmental context data were obtained from taxonomic registries, gazetteers, almanacs, climatologies, operational biogeochemical models, and satellite observations. The quality of the different environmental measures has been validated not only by various quality control steps, but also through a global analysis allowing the comparison with known environmental large-scale structures. Such publicly released datasets open the perspective to address a wide range of scientific questions.

UR - http://www.scopus.com/inward/record.url?scp=85160940081&partnerID=8YFLogxK

U2 - 10.1038/s41597-022-01757-w

DO - 10.1038/s41597-022-01757-w

M3 - مقالة

C2 - 37264023

SN - 2052-4463

VL - 10

JO - Scientific data

JF - Scientific data

M1 - 324

ER -

Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems

Abstract

All Science Journal Classification (ASJC) codes

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