Neurophotonic tools for microscopic measurements and manipulation: status report

Ahmed S Abdelfattah; Sapna Ahuja; Taner Akkin; Srinivasa Rao Allu; Joshua Brake; David A Boas; Erin M Buckley; Robert E Campbell; Anderson I Chen; Xiaojun Cheng; Tomáš Čižmár; Irene Costantini; Massimo De Vittorio; Anna Devor; Patrick R Doran; Mirna El Khatib; Valentina Emiliani; Natalie Fomin-Thunemann; Yeshaiahu Fainman; Christopher G. L Ferri; Tomas Fernandez-Alfonso; Ariel Gilad; Xue Han; Andrew Harris; Elizabeth M. C Hillman; Ute Hochgeschwender; Matthew G Holt; Na Ji; Kıvılcım Kılıç; Evelyn M. R Lake; Lei Li; Tianqi Li; Philipp Mächler; Evan W Miller; Rickson C Mesquita; K. M. Naga Srinivas Nadella; U. Valentin Nägerl; Yusuke Nasu; Axel Nimmerjahn; Petra Ondráčková; Francesco S Pavone; Citlali Perez Campos; Darcy S Peterka; Filippo Pisano; Ferruccio Pisanello; Francesca Puppo; Bernardo L Sabatini; Sanaz Sadegh; Sava Sakadzic; Shy Shoham; Sanaya N Shroff; R. Angus Silver; Ruth R Sims; Spencer L Smith; Vivek J Srinivasan; Martin Thunemann; Lei Tian; Lin Tian; Thomas Troxler; Antoine Valera; Alipasha Vaziri; Sergei A Vinogradov; Flavia Vitale; Lihong V Wang; Hana Uhlířová; Chris Xu; Changhuei Yang; Mu-Han Yang; Gary Yellen; Ofer Yizhar; Yongxin Zhao; Tom Ci m r; Klvllclm Klllç; Hana Uhlírová

doi:10.1117/1.NPh.9.S1.013001

Neurophotonic tools for microscopic measurements and manipulation: status report

Ahmed S Abdelfattah, Sapna Ahuja, Taner Akkin, Srinivasa Rao Allu, Joshua Brake, David A Boas, Erin M Buckley, Robert E Campbell, Anderson I Chen, Xiaojun Cheng, Tomáš Čižmár, Irene Costantini, Massimo De Vittorio, Anna Devor, Patrick R Doran, Mirna El Khatib, Valentina Emiliani, Natalie Fomin-Thunemann, Yeshaiahu Fainman, Christopher G. L FerriTomas Fernandez-Alfonso, Ariel Gilad, Xue Han, Andrew Harris, Elizabeth M. C Hillman, Ute Hochgeschwender, Matthew G Holt, Na Ji, Kıvılcım Kılıç, Evelyn M. R Lake, Lei Li, Tianqi Li, Philipp Mächler, Evan W Miller, Rickson C Mesquita, K. M. Naga Srinivas Nadella, U. Valentin Nägerl, Yusuke Nasu, Axel Nimmerjahn, Petra Ondráčková, Francesco S Pavone, Citlali Perez Campos, Darcy S Peterka, Filippo Pisano, Ferruccio Pisanello, Francesca Puppo, Bernardo L Sabatini, Sanaz Sadegh, Sava Sakadzic, Shy Shoham, Sanaya N Shroff, R. Angus Silver, Ruth R Sims, Spencer L Smith, Vivek J Srinivasan, Martin Thunemann, Lei Tian, Lin Tian, Thomas Troxler, Antoine Valera, Alipasha Vaziri, Sergei A Vinogradov, Flavia Vitale, Lihong V Wang, Hana Uhlířová, Chris Xu, Changhuei Yang, Mu-Han Yang, Gary Yellen, Ofer Yizhar, Yongxin Zhao, Tom Ci m r, Klvllclm Klllç, Hana Uhlírová

Weizmann Institute of Science, The Hebrew University of Jerusalem

Research output: Contribution to journal › Article › peer-review

Abstract

Neurophotonics was launched in 2014 coinciding with the launch of the BRAIN Initiative focused on development of technologies for advancement of neuroscience. For the last seven years, Neurophotonics’ agenda has been well aligned with this focus on neurotechnologies featuring new optical methods and tools applicable to brain studies. While the BRAIN Initiative 2.0 is pivoting towards applications of these novel tools in the quest to understand the brain, this status report reviews an extensive and diverse toolkit of novel methods to explore brain function that have emerged from the BRAIN Initiative and related large-scale efforts for measurement and manipulation of brain structure and function. Here, we focus on neurophotonic tools mostly applicable to animal studies. A companion report, scheduled to appear later this year, will cover diffuse optical imaging methods applicable to noninvasive human studies. For each domain, we outline the current state-of-the-art of the respective technologies, identify the areas where innovation is needed, and provide an outlook for the future directions.

Original language	English
Article number	013001
Pages (from-to)	13001
Number of pages	86
Journal	Neurophotonics (Print)
Volume	9
Issue number	S1
DOIs	https://doi.org/10.1117/1.NPh.9.S1.013001
State	Published - 1 Jan 2022

Keywords

blood flow
fluorescence
label free
molecular sensors
multimodal
optical imaging
optogenetics

All Science Journal Classification (ASJC) codes

Neuroscience (miscellaneous)
Radiological and Ultrasound Technology
Radiology Nuclear Medicine and imaging

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https://www.spiedigitallibrary.org/journals/neurophotonics/volume-9/issue-S1/013001/Neurophotonic-tools-for-microscopic-measurements-and-manipulation-status-report/10.1117/1.NPh.9.S1.013001.pdf

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Abdelfattah, A. S., Ahuja, S., Akkin, T., Allu, S. R., Brake, J., Boas, D. A., Buckley, E. M., Campbell, R. E., Chen, A. I., Cheng, X., Čižmár, T., Costantini, I., De Vittorio, M., Devor, A., Doran, P. R., El Khatib, M., Emiliani, V., Fomin-Thunemann, N., Fainman, Y., ... Uhlírová, H. (2022). Neurophotonic tools for microscopic measurements and manipulation: status report. Neurophotonics (Print), 9(S1), 13001. Article 013001. https://doi.org/10.1117/1.NPh.9.S1.013001

@article{05008e87c285472194854bd3e1a714af,

title = "Neurophotonic tools for microscopic measurements and manipulation: status report",

abstract = "Neurophotonics was launched in 2014 coinciding with the launch of the BRAIN Initiative focused on development of technologies for advancement of neuroscience. For the last seven years, Neurophotonics{\textquoteright} agenda has been well aligned with this focus on neurotechnologies featuring new optical methods and tools applicable to brain studies. While the BRAIN Initiative 2.0 is pivoting towards applications of these novel tools in the quest to understand the brain, this status report reviews an extensive and diverse toolkit of novel methods to explore brain function that have emerged from the BRAIN Initiative and related large-scale efforts for measurement and manipulation of brain structure and function. Here, we focus on neurophotonic tools mostly applicable to animal studies. A companion report, scheduled to appear later this year, will cover diffuse optical imaging methods applicable to noninvasive human studies. For each domain, we outline the current state-of-the-art of the respective technologies, identify the areas where innovation is needed, and provide an outlook for the future directions.",

keywords = "blood flow, fluorescence, label free, molecular sensors, multimodal, optical imaging, optogenetics",

author = "Abdelfattah, \{Ahmed S\} and Sapna Ahuja and Taner Akkin and Allu, \{Srinivasa Rao\} and Joshua Brake and Boas, \{David A\} and Buckley, \{Erin M\} and Campbell, \{Robert E\} and Chen, \{Anderson I\} and Xiaojun Cheng and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and Irene Costantini and \{De Vittorio\}, Massimo and Anna Devor and Doran, \{Patrick R\} and \{El Khatib\}, Mirna and Valentina Emiliani and Natalie Fomin-Thunemann and Yeshaiahu Fainman and Ferri, \{Christopher G. L\} and Tomas Fernandez-Alfonso and Ariel Gilad and Xue Han and Andrew Harris and Hillman, \{Elizabeth M. C\} and Ute Hochgeschwender and Holt, \{Matthew G\} and Na Ji and Kıvılcım Kılı{\c c} and Lake, \{Evelyn M. R\} and Lei Li and Tianqi Li and Philipp M{\"a}chler and Miller, \{Evan W\} and Mesquita, \{Rickson C\} and Nadella, \{K. M. Naga Srinivas\} and N{\"a}gerl, \{U. Valentin\} and Yusuke Nasu and Axel Nimmerjahn and Petra Ondr{\'a}{\v c}kov{\'a} and Pavone, \{Francesco S\} and \{Perez Campos\}, Citlali and Peterka, \{Darcy S\} and Filippo Pisano and Ferruccio Pisanello and Francesca Puppo and Sabatini, \{Bernardo L\} and Sanaz Sadegh and Sava Sakadzic and Shy Shoham and Shroff, \{Sanaya N\} and Silver, \{R. Angus\} and Sims, \{Ruth R\} and Smith, \{Spencer L\} and Srinivasan, \{Vivek J\} and Martin Thunemann and Lei Tian and Lin Tian and Thomas Troxler and Antoine Valera and Alipasha Vaziri and Vinogradov, \{Sergei A\} and Flavia Vitale and Wang, \{Lihong V\} and Hana Uhl{\'i}{\v r}ov{\'a} and Chris Xu and Changhuei Yang and Mu-Han Yang and Gary Yellen and Ofer Yizhar and Yongxin Zhao and \{Ci m r\}, Tom and Klvllclm Klll{\c c} and Hana Uhl{\'i}rov{\'a}",

note = "Publisher Copyright: {\textcopyright} The Authors. Published by SPIE under a Creative Commons Attribution 4.0 International License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.",

year = "2022",

month = jan,

day = "1",

doi = "10.1117/1.NPh.9.S1.013001",

language = "الإنجليزيّة",

volume = "9",

pages = "13001",

journal = "Neurophotonics (Print)",

issn = "2329-423X",

publisher = "SPIE",

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Abdelfattah, AS, Ahuja, S, Akkin, T, Allu, SR, Brake, J, Boas, DA, Buckley, EM, Campbell, RE, Chen, AI, Cheng, X, Čižmár, T, Costantini, I, De Vittorio, M, Devor, A, Doran, PR, El Khatib, M, Emiliani, V, Fomin-Thunemann, N, Fainman, Y, Ferri, CGL, Fernandez-Alfonso, T, Gilad, A, Han, X, Harris, A, Hillman, EMC, Hochgeschwender, U, Holt, MG, Ji, N, Kılıç, K, Lake, EMR, Li, L, Li, T, Mächler, P, Miller, EW, Mesquita, RC, Nadella, KMNS, Nägerl, UV, Nasu, Y, Nimmerjahn, A, Ondráčková, P, Pavone, FS, Perez Campos, C, Peterka, DS, Pisano, F, Pisanello, F, Puppo, F, Sabatini, BL, Sadegh, S, Sakadzic, S, Shoham, S, Shroff, SN, Silver, RA, Sims, RR, Smith, SL, Srinivasan, VJ, Thunemann, M, Tian, L, Tian, L, Troxler, T, Valera, A, Vaziri, A, Vinogradov, SA, Vitale, F, Wang, LV, Uhlířová, H, Xu, C, Yang, C, Yang, M-H, Yellen, G, Yizhar, O, Zhao, Y, Ci m r, T, Klllç, K & Uhlírová, H 2022, 'Neurophotonic tools for microscopic measurements and manipulation: status report', Neurophotonics (Print), vol. 9, no. S1, 013001, pp. 13001. https://doi.org/10.1117/1.NPh.9.S1.013001

TY - JOUR

T1 - Neurophotonic tools for microscopic measurements and manipulation

T2 - status report

AU - Abdelfattah, Ahmed S

AU - Ahuja, Sapna

AU - Akkin, Taner

AU - Allu, Srinivasa Rao

AU - Brake, Joshua

AU - Boas, David A

AU - Buckley, Erin M

AU - Campbell, Robert E

AU - Chen, Anderson I

AU - Cheng, Xiaojun

AU - Čižmár, Tomáš

AU - Costantini, Irene

AU - De Vittorio, Massimo

AU - Devor, Anna

AU - Doran, Patrick R

AU - El Khatib, Mirna

AU - Emiliani, Valentina

AU - Fomin-Thunemann, Natalie

AU - Fainman, Yeshaiahu

AU - Ferri, Christopher G. L

AU - Fernandez-Alfonso, Tomas

AU - Gilad, Ariel

AU - Han, Xue

AU - Harris, Andrew

AU - Hillman, Elizabeth M. C

AU - Hochgeschwender, Ute

AU - Holt, Matthew G

AU - Ji, Na

AU - Kılıç, Kıvılcım

AU - Lake, Evelyn M. R

AU - Li, Lei

AU - Li, Tianqi

AU - Mächler, Philipp

AU - Miller, Evan W

AU - Mesquita, Rickson C

AU - Nadella, K. M. Naga Srinivas

AU - Nägerl, U. Valentin

AU - Nasu, Yusuke

AU - Nimmerjahn, Axel

AU - Ondráčková, Petra

AU - Pavone, Francesco S

AU - Perez Campos, Citlali

AU - Peterka, Darcy S

AU - Pisano, Filippo

AU - Pisanello, Ferruccio

AU - Puppo, Francesca

AU - Sabatini, Bernardo L

AU - Sadegh, Sanaz

AU - Sakadzic, Sava

AU - Shoham, Shy

AU - Shroff, Sanaya N

AU - Silver, R. Angus

AU - Sims, Ruth R

AU - Smith, Spencer L

AU - Srinivasan, Vivek J

AU - Thunemann, Martin

AU - Tian, Lei

AU - Tian, Lin

AU - Troxler, Thomas

AU - Valera, Antoine

AU - Vaziri, Alipasha

AU - Vinogradov, Sergei A

AU - Vitale, Flavia

AU - Wang, Lihong V

AU - Uhlířová, Hana

AU - Xu, Chris

AU - Yang, Changhuei

AU - Yang, Mu-Han

AU - Yellen, Gary

AU - Yizhar, Ofer

AU - Zhao, Yongxin

AU - Ci m r, Tom

AU - Klllç, Klvllclm

AU - Uhlírová, Hana

N1 - Publisher Copyright: © The Authors. Published by SPIE under a Creative Commons Attribution 4.0 International License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.

PY - 2022/1/1

Y1 - 2022/1/1

N2 - Neurophotonics was launched in 2014 coinciding with the launch of the BRAIN Initiative focused on development of technologies for advancement of neuroscience. For the last seven years, Neurophotonics’ agenda has been well aligned with this focus on neurotechnologies featuring new optical methods and tools applicable to brain studies. While the BRAIN Initiative 2.0 is pivoting towards applications of these novel tools in the quest to understand the brain, this status report reviews an extensive and diverse toolkit of novel methods to explore brain function that have emerged from the BRAIN Initiative and related large-scale efforts for measurement and manipulation of brain structure and function. Here, we focus on neurophotonic tools mostly applicable to animal studies. A companion report, scheduled to appear later this year, will cover diffuse optical imaging methods applicable to noninvasive human studies. For each domain, we outline the current state-of-the-art of the respective technologies, identify the areas where innovation is needed, and provide an outlook for the future directions.

AB - Neurophotonics was launched in 2014 coinciding with the launch of the BRAIN Initiative focused on development of technologies for advancement of neuroscience. For the last seven years, Neurophotonics’ agenda has been well aligned with this focus on neurotechnologies featuring new optical methods and tools applicable to brain studies. While the BRAIN Initiative 2.0 is pivoting towards applications of these novel tools in the quest to understand the brain, this status report reviews an extensive and diverse toolkit of novel methods to explore brain function that have emerged from the BRAIN Initiative and related large-scale efforts for measurement and manipulation of brain structure and function. Here, we focus on neurophotonic tools mostly applicable to animal studies. A companion report, scheduled to appear later this year, will cover diffuse optical imaging methods applicable to noninvasive human studies. For each domain, we outline the current state-of-the-art of the respective technologies, identify the areas where innovation is needed, and provide an outlook for the future directions.

KW - blood flow

KW - fluorescence

KW - label free

KW - molecular sensors

KW - multimodal

KW - optical imaging

KW - optogenetics

UR - http://www.scopus.com/inward/record.url?scp=85129321141&partnerID=8YFLogxK

U2 - 10.1117/1.NPh.9.S1.013001

DO - 10.1117/1.NPh.9.S1.013001

M3 - مقالة

C2 - 35493335

SN - 2329-423X

VL - 9

SP - 13001

JO - Neurophotonics (Print)

JF - Neurophotonics (Print)

IS - S1

M1 - 013001

ER -

Neurophotonic tools for microscopic measurements and manipulation: status report

Abstract

Keywords

All Science Journal Classification (ASJC) codes

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