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lncRNAlyzr: Enrichment Analysis for lncRNA Sets

John Erol Evangelista, Tahleel Ali-Nasser, Lauren E. Malek, Zhuorui Xie, Giacomo B. Marino, Assaf C. Bester, Avi Ma'ayan

Research output: Contribution to journalArticlepeer-review

Abstract

lncRNAs make up a large portion of the human genome affecting many biological processes in normal physiology and diseases. However, human lncRNAs are understudied compared to protein-coding genes. While there are many tools for performing gene set enrichment analysis for coding genes, few tools exist for lncRNA enrichment analysis. lncRNAlyzr is a webserver application designed for lncRNAs enrichment analysis. lncRNAlyzr has a database containing 33 lncRNA set libraries created by computing correlations between lncRNAs and annotated coding gene sets. After users submit a set of lncRNAs to lncRNAlyzr, the enrichment analysis results are visualized as ball-and-stick subnetworks where nodes are lncRNAs connected to enrichment terms from across selected lncRNA set libraries. To demonstrate lncRNAlyzr, it was used to analyze the effects of knocking down the lncRNA CYTOR in K562 cells. Overall, lncRNAlyzr is an enrichment analysis tool for lncRNAs aiming to further our understanding of lncRNAs functional modules. lncRNAlyzr is available from: https://lncrnalyzr.maayanlab.cloud.

Original languageEnglish
Article number168938
JournalJournal of Molecular Biology
Volume437
Issue number15
DOIs
StateAccepted/In press - 2025

Keywords

  • Enrichr
  • Enrichr-KG
  • enrichment analysis
  • knowledge graphs
  • lncRNA

All Science Journal Classification (ASJC) codes

  • Biophysics
  • Structural Biology
  • Molecular Biology

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