TY - GEN
T1 - Cover Your Bases
T2 - 2023 IEEE International Symposium on Information Theory, ISIT 2023
AU - Bar-Lev, Daniella
AU - Sabary, Omer
AU - Gabrys, Ryan
AU - Yaakobi, Eitan
N1 - Publisher Copyright: © 2023 IEEE.
PY - 2023
Y1 - 2023
N2 - Although the expenses associated with DNA sequencing have been rapidly decreasing, the current cost stands at roughly 1.3K/TB, which is dramatically more expensive than reading from existing archival storage solutions today. In this work, we aim to reduce not only the cost but also the latency of DNA storage by studying the DNA coverage depth problem, which aims to reduce the required number of reads to retrieve information from the storage system. Under this framework, our main goal is to understand how to optimally pair an error-correcting code with a given retrieval algorithm to minimize the sequencing coverage depth, while guaranteeing retrieval of the information with high probability. Additionally, we study the DNA coverage depth problem under the random-access setup.
AB - Although the expenses associated with DNA sequencing have been rapidly decreasing, the current cost stands at roughly 1.3K/TB, which is dramatically more expensive than reading from existing archival storage solutions today. In this work, we aim to reduce not only the cost but also the latency of DNA storage by studying the DNA coverage depth problem, which aims to reduce the required number of reads to retrieve information from the storage system. Under this framework, our main goal is to understand how to optimally pair an error-correcting code with a given retrieval algorithm to minimize the sequencing coverage depth, while guaranteeing retrieval of the information with high probability. Additionally, we study the DNA coverage depth problem under the random-access setup.
UR - http://www.scopus.com/inward/record.url?scp=85171435708&partnerID=8YFLogxK
U2 - https://doi.org/10.1109/ISIT54713.2023.10206882
DO - https://doi.org/10.1109/ISIT54713.2023.10206882
M3 - منشور من مؤتمر
T3 - IEEE International Symposium on Information Theory - Proceedings
SP - 370
EP - 375
BT - 2023 IEEE International Symposium on Information Theory, ISIT 2023
Y2 - 25 June 2023 through 30 June 2023
ER -