Characterization of Unidirectional Replication Forks in the Mouse Genome

Avital Zerbib, Itamar Simon

Research output: Contribution to journalArticlepeer-review

Abstract

Origins of replication are genomic regions in which replication initiates in a bidirectional manner. Recently, a new methodology (origin-derived single-stranded DNA sequencing; ori-SSDS) was developed that allows the detection of replication initiation in a strand-specific manner. Reanalysis of the strand-specific data revealed that 18–33% of the peaks are non-symmetrical, suggesting a single direction of replication. Analysis of replication fork direction data revealed that these are origins of replication in which the replication is paused in one of the directions, probably due to the existence of a replication fork barrier. Analysis of the unidirectional origins revealed a preference of G4 quadruplexes for the blocked leading strand. Taken together, our analysis identified hundreds of genomic locations in which the replication initiates only in one direction, and suggests that G4 quadruplexes may serve as replication fork barriers in such places.

Original languageAmerican English
Article number9611
JournalINTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
Volume24
Issue number11
DOIs
StatePublished - 1 Jun 2023

Keywords

  • G4 quadruplex
  • bidirectional replication
  • ori-SSDS
  • origin of replication
  • replication fork barrier
  • replication fork direction
  • unidirectional replication

All Science Journal Classification (ASJC) codes

  • Molecular Biology
  • Spectroscopy
  • Catalysis
  • Inorganic Chemistry
  • Computer Science Applications
  • Physical and Theoretical Chemistry
  • Organic Chemistry

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