A Fusion PCR Method for Expressing Genetic Tools in C. elegans

Eduard Bokman, Yifat Eliezer, Alon Zaslaver

Research output: Chapter in Book/Report/Conference proceedingChapterpeer-review


C. elegans offer a unique opportunity for understanding computation in neural networks. This is largely due to their relatively compact neural network for which a wiring diagram is available. Recent advances in genetic tools for interrogating neural activity (e.g., optogenetics) make C. elegans particularly compelling as they can be expressed in many different combinations in target individual neurons. Thus, the prospect to decipher principles underlying functionality in neural networks largely depends on the ease by which transgenic animals can be generated. Traditionally, to generate transgenic animals one would inject a plasmid containing the gene of interest under the regulation of the cell- or lineage-specific promoter. This often requires laborious cloning steps of both the gene and the promoter. The Hobert lab has developed a simpler protocol in which linear PCR fragments can be injected to generate transgenic animals. Relying on this PCR fusion-based method, here we provide a detailed protocol that we have optimized for expressing various genetically encoded calcium indicators and optogenetic tools in individual or sets of neurons. We use these simple procedures to generate multiple constructs within a very short time frame (typically 1–2 days).

Original languageAmerican English
Title of host publicationMethods in Molecular Biology
Number of pages10
StatePublished - 2022

Publication series

NameMethods in Molecular Biology


  • Animals
  • C. elegans
  • Caenorhabditis elegans/genetics
  • Fluorescent reporters
  • Fusion PCR
  • Gene Fusion
  • Neurons/physiology
  • Optogenetics
  • Optogenetics/methods
  • Polymerase Chain Reaction
  • Transgenics

All Science Journal Classification (ASJC) codes

  • Genetics
  • Molecular Biology


Dive into the research topics of 'A Fusion PCR Method for Expressing Genetic Tools in C. elegans'. Together they form a unique fingerprint.

Cite this