3D FLAT: Feasible Learned Acquisition Trajectories for Accelerated MRI

Jonathan Alush-Aben, Linor Ackerman-Schraier, Tomer Weiss, Sanketh Vedula, Ortal Senouf, Alex Bronstein

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

Abstract

Magnetic Resonance Imaging (MRI) has long been considered to be among the gold standards of today’s diagnostic imaging. The most significant drawback of MRI is long acquisition times, prohibiting its use in standard practice for some applications. Compressed sensing (CS) proposes to subsample the k-space (the Fourier domain dual to the physical space of spatial coordinates) leading to significantly accelerated acquisition. However, the benefit of compressed sensing has not been fully exploited; most of the sampling densities obtained through CS do not produce a trajectory that obeys the stringent constraints of the MRI machine imposed in practice. Inspired by recent success of deep learning-based approaches for image reconstruction and ideas from computational imaging on learning-based design of imaging systems, we introduce 3D FLAT, a novel protocol for data-driven design of 3D non-Cartesian accelerated trajectories in MRI. Our proposal leverages the entire 3D k-space to simultaneously learn a physically feasible acquisition trajectory with a reconstruction method. Experimental results, performed as a proof-of-concept, suggest that 3D FLAT achieves higher image quality for a given readout time compared to standard trajectories such as radial, stack-of-stars, or 2D learned trajectories (trajectories that evolve only in the 2D plane while fully sampling along the third dimension). Furthermore, we demonstrate evidence supporting the significant benefit of performing MRI acquisitions using non-Cartesian 3D trajectories over 2D non-Cartesian trajectories acquired slice-wise.

Original languageEnglish
Title of host publicationMachine Learning for Medical Image Reconstruction - 3rd International Workshop, MLMIR 2020, Held in Conjunction with MICCAI 2020, Proceedings
EditorsFarah Deeba, Patricia Johnson, Tobias Würfl, Jong Chul Ye
PublisherSpringer Science and Business Media Deutschland GmbH
Pages3-16
Number of pages14
ISBN (Print)9783030615970
DOIs
StatePublished - 2020
Event3rd International Workshop on Machine Learning for Medical Image Reconstruction, MLMIR 2020, held in conjunction with the 23rd Medical Image Computing and Computer Assisted Intervention, MICCAI 2020 - Lima, Peru
Duration: 8 Oct 20208 Oct 2020

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume12450 LNCS

Conference

Conference3rd International Workshop on Machine Learning for Medical Image Reconstruction, MLMIR 2020, held in conjunction with the 23rd Medical Image Computing and Computer Assisted Intervention, MICCAI 2020
Country/TerritoryPeru
CityLima
Period8/10/208/10/20

Keywords

  • 3D MRI
  • Compressed sensing
  • Deep learning
  • Fast image acquisition
  • Image reconstruction
  • Magnetic Resonance Imaging
  • Neural networks

All Science Journal Classification (ASJC) codes

  • Theoretical Computer Science
  • General Computer Science

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