Research output per year
Research output per year
- 1 - 50 out of 109 results
Search results
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2025
On the Capacity of DNA Labeling
Hanania, D., Bar-Lev, D., Nogin, Y., Shechtman, Y. & Yaakobi, E., 2025, (Accepted/In press) In: IEEE Transactions on Information Theory.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
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Point spread function modeling and engineering in black-box lens systems
Xiao, D., Kedem, R. O. & Shechtman, Y., 10 Feb 2025, In: Optics Express. 33, 3, p. 4211-4224 14 p.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
Preface to the special issue on advances in localization microscopy
Brasselet, S., Shechtman, Y. & Smith, C., Mar 2025, In: Optics Communications. 577, 131362.Technion - Israel Institute of Technology
Research output: Contribution to journal › Editorial
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This Microtubule Does Not Exist: Super-Resolution Microscopy Image Generation by a Diffusion Model
Saguy, A., Nahimov, T., Lehrman, M., Gómez-de-Mariscal, E., Hidalgo-Cenalmor, I., Alalouf, O., Balakrishnan, A., Heilemann, M., Henriques, R. & Shechtman, Y., 20 Mar 2025, In: Small Methods. 9, 3, 2400672.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
2024
Depth-enhanced high-throughput microscopy by compact PSF engineering
Opatovski, N., Nehme, E., Zoref, N., Barzilai, I., Orange Kedem, R., Ferdman, B., Keselman, P., Alalouf, O. & Shechtman, Y., Dec 2024, In: Nature Communications. 15, 1, 4861.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
DL4MicEverywhere: deep learning for microscopy made flexible, shareable and reproducible
AI4Life Horizon Europe Program Consortium, Jun 2024, In: Nature Methods. 21, 6, p. 925-927 3 p.Technion - Israel Institute of Technology
Research output: Contribution to journal › Letter › peer-review
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Fluorescence microscopy: A statistics-optics perspective
Fazel, M., Grussmayer, K. S., Ferdman, B., Radenovic, A., Shechtman, Y., Enderlein, J. & Pressé, S., Apr 2024, In: Reviews of Modern Physics. 96, 2, 025003.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
Large-FOV 3D localization microscopy by spatially variant point spread function generation
Xiao, D., Orange, R. K., Opatovski, N., Parizat, A., Nehme, E., Alalouf, O. & Shechtman, Y., Mar 2024, In: Science Advances. 10, 10, eadj3656.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
Long-Axial-Range Double-Helix Point Spread Functions for 3D Volumetric Super-Resolution Imaging
Nakatani, Y., Gaumer, S., Shechtman, Y. & Gustavsson, A. K., 21 Nov 2024, In: Journal of Physical Chemistry B. 128, 46, p. 11379-11388 10 p.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
OM2Seq: learning retrieval embeddings for optical genome mapping
Nogin, Y., Sapir, D., Zur, T. D., Weinberger, N., Belinkov, Y., Ebenstein, Y. & Shechtman, Y., 2024, In: Bioinformatics Advances. 4, 1, vbae079.Tel Aviv University, Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
Universal inverse modeling of point spread functions for SMLM localization and microscope characterization
Liu, S., Chen, J., Hellgoth, J., Müller, L. R., Ferdman, B., Karras, C., Xiao, D., Lidke, K. A., Heintzmann, R., Shechtman, Y., Li, Y. & Ries, J., Jun 2024, In: Nature Methods. 21, 6, p. 1082-1093 12 p.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
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2023
3D Printing-Based Fabrication of Diffractive Optical Elements by Near-Index-Matching
Orange-Kedem, R., Nehme, E., Weiss, L. E., Ferdman, B., Alalouf, O., Opatovski, N. & Shechtman, Y., 2023.Technion - Israel Institute of Technology
Research output: Contribution to conference › Paper › peer-review
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All-in-focus large-FOV GRIN lens imaging by multi-focus image fusion
Xiao, D., Lin, Z. & Shechtman, Y., 2023, In: OSA Continuum. 2, 11, p. 2290-2297 8 p.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
DBlink: dynamic localization microscopy in super spatiotemporal resolution via deep learning
Saguy, A., Alalouf, O., Opatovski, N., Jang, S., Heilemann, M. & Shechtman, Y., Dec 2023, In: Nature Methods. 20, 12, p. 1939-1948 10 p.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
DeepOM: single-molecule optical genome mapping via deep learning
Nogin, Y., Zur, T. D., Margalit, S., Barzilai, I., Alalouf, O., Ebenstein, Y. & Shechtman, Y., 1 Mar 2023, In: Bioinformatics. 39, 3, btad137.Tel Aviv University, Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
Design of optimal labeling patterns for optical genome mapping via information theory
Nogin, Y., Bar-Lev, D., Hanania, D., Detinis Zur, T., Ebenstein, Y., Yaakobi, E., Weinberger, N. & Shechtman, Y., 1 Oct 2023, In: Bioinformatics. 39, 10, btad601.Technion - Israel Institute of Technology, Tel Aviv University
Research output: Contribution to journal › Article › peer-review
Open Access -
Inverse modelling of point spread function for single-molecule localization microscopy
Liu, S., Hellgoth, J., Chen, J., Müller, L. R., Ferdman, B., Lidke, K. A., Shechtman, Y., Heintzmann, R., Li, Y. & Ries, J., 10 Feb 2023, In: Biophysical Journal. 122, 3S1, p. 280aTechnion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
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Near index matching enables solid diffractive optical element fabrication via additive manufacturing
Orange kedem, R., Opatovski, N., Xiao, D., Ferdman, B., Alalouf, O., Kumar Pal, S., Wang, Z., von der Emde, H., Weber, M., Sahl, S. J., Ponjavic, A., Arie, A., Hell, S. W. & Shechtman, Y., Dec 2023, In: Light: Science and Applications. 12, 1, 222.Tel Aviv University, Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
Neural network-assisted single-molecule localization microscopy with a weak-affinity protein tag
Jang, S., Narayanasamy, K. K., Rahm, J. V., Saguy, A., Kompa, J., Dietz, M. S., Johnsson, K., Shechtman, Y. & Heilemann, M., 13 Sep 2023, In: Biophysical Reports. 3, 3, 100123.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
On the Capacity of DNA Labeling
Hanania, D., Bar-Lev, D., Nogin, Y., Shechtman, Y. & Yaakobi, E., 2023, 2023 IEEE International Symposium on Information Theory, ISIT 2023. p. 567-572 6 p. (IEEE International Symposium on Information Theory - Proceedings; vol. 2023-June).Technion - Israel Institute of Technology
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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Point Spread Function Engineering for 3D Imaging in High-Throughput Microscopy
Zoref, N., Opatovski, N., Nehme, E., Avrashami, M., Barzilai, I., Orange, R. K., Ferdman, B., Alalouf, O., Azagury, D. M., Shamay, Y. & Shechtman, Y., 1 Jan 2023.Technion - Israel Institute of Technology
Research output: Contribution to conference › Paper › peer-review
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Point Spread Function Engineering for 3D Imaging in High-Throughput Microscopy
Zoref, N., Opatovski, N., Nehme, E., Avrashami, M., Barzilai, I., Orange, R. K., Ferdman, B., Alalouf, O., Azagury, D. M., Shamay, Y. & Shechtman, Y., 1 Jan 2023.Technion - Israel Institute of Technology
Research output: Contribution to conference › Paper › peer-review
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2022
Diffractive optical system design by cascaded propagation
Ferdman, B., Saguy, A., Xiao, D. & Shechtman, Y., 18 Jul 2022, In: Optics Express. 30, 15, p. 27509-27530 22 p.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
High-Throughput Imaging of CRISPR- and Recombinant Adeno-Associated Virus-Induced DNA Damage Response in Human Hematopoietic Stem and Progenitor Cells
Allen, D., Weiss, L. E., Saguy, A., Rosenberg, M., Iancu, O., Matalon, O., Lee, C., Beider, K., Nagler, A., Shechtman, Y. & Hendel, A., Feb 2022, In: CRISPR Journal. 5, 1, p. 80-94 15 p.Bar-Ilan University, Technion - Israel Institute of Technology, Tel Aviv University
Research output: Contribution to journal › Article › peer-review
Open Access -
Learning Optimal Multicolor PSF Design for 3D Pairwise Distance Estimation
Goldenberg, O., Ferdman, B., Nehme, E., Ezra, Y. S. & Shechtman, Y., 2022, In: Intelligent Computing. 2022, 0004.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
Monocular kilometer-scale passive ranging by point-spread function engineering
Opatovski, N., Xiao, D., Harari, G. & Shechtman, Y., 10 Oct 2022, In: Optics Express. 30, 21, p. 37925-37937 13 p.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
Programmable thermocapillary shaping of thin liquid films
Eshel, R., Frumkin, V., Nice, M., Luria, O., Ferdman, B., Opatovski, N., Gommed, K., Shusteff, M., Shechtman, Y. & Bercovici, M., 1 Jan 2022, In: Flow. 2, 13 p., E27.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
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Quantifying cell-cycle-dependent chromatin dynamics during interphase by live 3D tracking
Naor, T., Nogin, Y., Nehme, E., Ferdman, B., Weiss, L. E., Alalouf, O. & Shechtman, Y., 20 May 2022, In: iScience. 25, 5, 104197.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
Synthetic cells with self-activating optogenetic proteins communicate with natural cells
Adir, O., Albalak, M. R., Abel, R., Weiss, L. E., Chen, G., Gruber, A., Staufer, O., Kurman, Y., Kaminer, I., Shklover, J., Shainsky-Roitman, J., Platzman, I., Gepstein, L., Shechtman, Y., Horwitz, B. A. & Schroeder, A., 28 Apr 2022, In: Nature Communications. 13, 1, p. 2328 2328.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
THY1-mediated mechanisms converge to drive YAP activation in skin homeostasis and repair
Sedov, E., Koren, E., Chopra, S., Ankawa, R., Yosefzon, Y., Yusupova, M., Weiss, L. E., Mahly, A., Soffer, A., Feldman, A., Luxenburg, C., Shechtman, Y. & Fuchs, Y., Jul 2022, In: Nature Cell Biology. 24, 7, p. 1049-1063 15 p.Technion - Israel Institute of Technology, Tel Aviv University
Research output: Contribution to journal › Article › peer-review
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2021
3D printable diffractive optical elements by liquid immersion
Orange-Kedem, R., Nehme, E., Weiss, L. E., Ferdman, B., Alalouf, O., Opatovski, N. & Shechtman, Y., 1 Dec 2021, In: Nature Communications. 12, 1, 3067.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
Automated Analysis of Fluorescence Kinetics in Single-Molecule Localization Microscopy Data Reveals Protein Stoichiometry
Saguy, A., Baldering, T. N., Weiss, L. E., Nehme, E., Karathanasis, C., Dietz, M. S., Heilemann, M. & Shechtman, Y., 10 Jun 2021, In: Journal of Physical Chemistry B. 125, 22, p. 5716-5721 6 p.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
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Deep-ROCS: From speckle patterns to superior-resolved images by deep learning in rotating coherent scattering microscopy
Saguy, A., Junger, F., Peleg, A., Ferdman, B., Nehme, E., Rohrbach, A. & Shechtman, Y., 19 Jul 2021, In: Optics Express. 29, 15, p. 23877-23887 11 p.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
Democratising deep learning for microscopy with ZeroCostDL4Mic
von Chamier, L., Laine, R. F., Jukkala, J., Spahn, C., Krentzel, D., Nehme, E., Lerche, M., Hernández-Pérez, S., Mattila, P. K., Karinou, E., Holden, S., Solak, A. C., Krull, A., Buchholz, T. O., Jones, M. L., Royer, L. A., Leterrier, C., Shechtman, Y., Jug, F. & Heilemann, M. & 2 others, , 1 Dec 2021, In: Nature Communications. 12, 1, 2276.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
Learning Optimal Wavefront Shaping for Multi-Channel Imaging
Nehme, E., Ferdman, B., Weiss, L. E., Naor, T., Freedman, D., Michaeli, T. & Shechtman, Y., 1 Jul 2021, In: IEEE Transactions on Pattern Analysis and Machine Intelligence. 43, 7, p. 2179-2192 14 p., 9439955.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
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Liquid immersion enables 3D printable diffractive optical elements
Orange-Kedem, R., Nehme, E., Weiss, L. E., Ferdman, B., Alalouf, O., Opatovski, N. & Shechtman, Y., Jun 2021, 2021 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2021. (2021 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2021).Technion - Israel Institute of Technology
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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Liquid immersion enables 3D printable diffractive optical elements
Orange-Kedem, R., Nehme, E., Weiss, L. E., Ferdman, B., Alalouf, O., Opatovski, N. & Shechtman, Y., 2021, In: Optics InfoBase Conference Papers.Technion - Israel Institute of Technology
Research output: Contribution to journal › Conference article › peer-review
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Liquid immersion enables 3D printable diffractive optical elements
Orange-Kedem, R., Nehme, E., Weiss, L. E., Ferdman, B., Alalouf, O., Opatovski, N. & Shechtman, Y., 2021, The European Conference on Lasers and Electro-Optics, CLEO/Europe 2021. The Optical Society, (Optics InfoBase Conference Papers).Technion - Israel Institute of Technology
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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Liquid immersion enables 3D-printing of diffractive optical elements
Orange-Kedem, R., Nehme, E., Weiss, L. E., Ferdman, B., Alalouf, O., Opatovski, N. & Shechtman, Y., 2021, Novel Techniques in Microscopy, NTM 2021. The Optical Society, NF1C.4. (Optics InfoBase Conference Papers).Technion - Israel Institute of Technology
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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Multiplexed PSF Engineering for Three-Dimensional Multicolor Particle Tracking
Opatovski, N., Shalev Ezra, Y., Weiss, L. E., Ferdman, B., Orange-Kedem, R. & Shechtman, Y., 14 Jul 2021, In: Nano Letters. 21, 13, p. 5888-5895 8 p.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
Multiplexed PSF engineering - Photon-efficient simultaneous multicolor 3D particle tracking
Opatovski, N., Ezra, Y. S., Weiss, L. E., Ferdman, B., Orange, R. & Shechtman, Y., 2021, In: Optics InfoBase Conference Papers. NF1C.3.Research output: Contribution to journal › Conference article › peer-review
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Multiplexed PSF engineering - Photon-efficient simultaneous multicolor 3D particle tracking
Opatovski, N., Ezra, Y. S., Weiss, L. E., Ferdman, B., Orange, R. & Shechtman, Y., 2021, Novel Techniques in Microscopy, NTM 2021. The Optical Society, NF1C.3. (Optics InfoBase Conference Papers).Technion - Israel Institute of Technology
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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Photon-efficient three-dimensional simultaneous multicolor particle tracking by multiplexed PSF engineering
Opatovski, N., Ezra, Y. S., Weiss, L. E., Ferdman, B., Orange, R. & Shechtman, Y., 2021, In: Optics InfoBase Conference Papers.Technion - Israel Institute of Technology
Research output: Contribution to journal › Conference article › peer-review
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Photon-efficient three-dimensional simultaneous multicolor particle tracking by multiplexed PSF engineering
Opatovski, N., Ezra, Y. S., Weiss, L. E., Ferdman, B., Orange, R. & Shechtman, Y., 2021, The European Conference on Lasers and Electro-Optics, CLEO/Europe 2021. The Optical Society, (Optics InfoBase Conference Papers).Technion - Israel Institute of Technology
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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Photon-efficient three-dimensional simultaneous multicolor particle tracking by multiplexed PSF engineering
Opatovski, N., Ezra, Y. S., Weiss, L. E., Ferdman, B., Orange, R. & Shechtman, Y., Jun 2021, 2021 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2021. Institute of Electrical and Electronics Engineers Inc., (2021 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2021).Technion - Israel Institute of Technology
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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Three-dimensional localization microscopy by deep learning
Nehme, E., Ferdman, B., Freedman, D., Weiss, L. E., Gordon-Soffer, R., Naor, T., Kedem, R. O., Alalouf, O., Michaeli, T. & Shechtman, Y., 2021, In: Optics InfoBase Conference Papers.Technion - Israel Institute of Technology
Research output: Contribution to journal › Conference article › peer-review
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Three-dimensional localization microscopy by deep learning
Nehme, E., Ferdman, B., Freedman, D., Weiss, L. E., Gordon-Soffer, R., Naor, T., Kedem, R. O., Alalouf, O., Michaeli, T. & Shechtman, Y., 2021, 3D Image Acquisition and Display: Technology, Perception and Applications, 3D 2021. The Optical Society, (Optics InfoBase Conference Papers).Technion - Israel Institute of Technology
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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2020
25th Anniversary of STED Microscopy and the 20th Anniversary of SIM: Feature introduction
Kner, P., Manley, S., Shechtman, Y. & Stallinga, S., 1 Mar 2020, In: Biomedical Optics Express. 11, 3, p. 1707-1711 5 p.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
Open Access -
DeepSTORM3D: dense 3D localization microscopy and PSF design by deep learning: dense 3D localization microscopy and PSF design by deep learning
Nehme, E., Freedman, D., Gordon, R., Ferdman, B., Weiss, L. E., Alalouf, O., Naor, T., Orange, R., Michaeli, T. & Shechtman, Y., 1 Jul 2020, In: Nature Methods. 17, 7, p. 734-740 7 p.Technion - Israel Institute of Technology
Research output: Contribution to journal › Article › peer-review
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High density 3d localization microscopy by multimodal point spread function engineering
Ferdman, B., Nehme, E., Weiss, L. E., Orange, R. & Shechtman, Y., 2020, CLEO: Applications and Technology, CLEO_AT 2020. JW2A.3. (Optics InfoBase Conference Papers; vol. Part F181-CLEO-AT 2020).Technion - Israel Institute of Technology
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review