Research output per year
Research output per year
Personal profile
Research interests
Research Areas:
- Neuro-engineering
- Genomics
- Data Science
- Super-resolution imaging
- Neuroscience
- Computational Biology
- Cancer Biology
Spatial genomics is a new field that seeks to map the physical position of millions of RNA molecules in cells and tissues and correlate them to normal and pathological conditions. We developed a technology for RNA sequencing inside tissues, which allows studying RNA molecules with unprecedented detail. We use this technology to unravel how molecular content is stored within cells in space in order to understand the function of complex tissues.
Education/Academic qualification
PhD, Tel Aviv University
Oct 2009 → Jun 2014
Award Date: 1 Jun 2014
Master, Tel Aviv University
Oct 2006 → Jun 2008
Award Date: 1 Jun 2008
Bachelor, Bar-Ilan University
Nov 1997 → Nov 2000
Award Date: 1 Nov 2000
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Klughammer, J., Abravanel, D. L., Segerstolpe, Å., Blosser, T. R., Goltsev, Y., Cui, Y., Goodwin, D. R., Sinha, A., Ashenberg, O., Slyper, M., Vigneau, S., Jané‐Valbuena, J., Alon, S., Caraccio, C., Chen, J., Cohen, O., Cullen, N., DelloStritto, L. K., Dionne, D. & Files, J. & 39 others, , 1 Nov 2024, In: Nature Medicine. 30, 11, p. 3236-3249 14 p.Ben-Gurion University of the Negev, The Hebrew University of Jerusalem, Bar-Ilan University
Research output: Contribution to journal › Article › peer-review
Open Access -
Computational analysis of super-resolved in situ sequencing data reveals genes modified by immune-tumor contact events
Danino-Levi, M., Goldberg, T., Keter, M., Akselrod, N., Shprach-Buaron, N., Safra, M., Singer, G. & Alon, S., 17 Jun 2024, In: RNA. 30, 7, p. 749-759 11 p.Research output: Contribution to journal › Article › peer-review
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MolOptimizer: A Molecular Optimization Toolkit for Fragment-Based Drug Design
Soffer, A., Viswas, S. J., Alon, S., Rozenberg, N., Peled, A., Piro, D., Vilenchik, D. & Akabayov, B., 1 Jan 2024, In: Molecules. 29, 1, 276.Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
Open Access -
Behavioral Neuroscience in the Era of Genomics: Tools and Lessons for Analyzing High-Dimensional Datasets
Bentzur, A., Alon, S. & Shohat-ophir, G., 1 Apr 2022, In: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 23, 7, 3811.Research output: Contribution to journal › Review article › peer-review
Open Access -
MITI minimum information guidelines for highly multiplexed tissue images
Human Tumor Atlas Network, 1 Mar 2022, In: Nature Methods. 19, 3, p. 262-267 6 p.Research output: Contribution to journal › Comment/debate
Open Access