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  • 2020

    A mixture model for signature discovery from sparse mutation data

    Sason, I., Chen, Y., Leiserson, M. D. M. & Sharan, R., 2020, Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Proceedings. Schwartz, R. (ed.). p. 271-272 2 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12074 LNBI).

    Tel Aviv University

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
  • 2019

    A Robustness Analysis of Dynamic Boolean Models of Cellular Circuits

    Bruner, A. & Sharan, R., 2019, Bioinformatics Research and Applications - 15th International Symposium, ISBRA 2019, Proceedings. Li, M., Cai, Z. & Skums, P. (eds.). p. 183-195 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11490 LNBI).

    Tel Aviv University

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • A Sticky Multinomial Mixture Model of Strand-Coordinated Mutational Processes in Cancer

    Sason, I., Wojtowicz, D., Robinson, W., Leiserson, M. D. M., Przytycka, T. M. & Sharan, R., 2019, Research in Computational Molecular Biology - 23rd Annual International Conference, RECOMB 2019, Proceedings. Cowen, L. J. (ed.). p. 243-255 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11467 LNBI).

    Tel Aviv University

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2018

    A dynamic algorithm for network propagation

    Sternberg, B. & Sharan, R., 1 Aug 2018, 18th International Workshop on Algorithms in Bioinformatics, WABI 2018. Parida, L. & Ukkonen, E. (eds.). 7. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 113).

    Tel Aviv University

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Modulomics: Integrating multi-omics data to identify cancer driver modules

    Silverbush, D., Cristea, S., Yanovich, G., Geiger, T., Beerenwinkel, N. & Sharan, R., 2018, Research in Computational Molecular Biology - 22nd Annual International Conference, RECOMB 2018, Proceedings. Raphael, B. J. (ed.). Springer Verlag, p. 283-284 2 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10812 LNBI).

    Tel Aviv University

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2017

    BeWith: A between-within method for module discovery in cancer using integrated analysis of mutual exclusivity, co-occurrence and functional interactions

    Dao, P., Kim, Y. A., Madan, S., Sharan, R. & Przytycka, T. M., 2017, Research in Computational Molecular Biology - 21st Annual International Conference, RECOMB 2017, Proceedings. Sahinalp, S. C. (ed.). p. 370-371 2 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10229 LNCS).

    Tel Aviv University

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2016

    Copy-number evolution problems: Complexity and algorithms

    El-Kebir, M., Raphael, B. J., Shamir, R., Sharan, R., Zaccaria, S., Zehavi, M. & Zeira, R., 1 Jan 2016, Algorithms in Bioinformatics - 16th International Workshop, WABI 2016, Proceedings. Frith, M. & Pedersen, C. N. S. (eds.). p. 137-149 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9838 LNCS).

    Tel Aviv University

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2015

    Functional alignment of metabolic networks

    Mazza, A., Wagner, A., Ruppin, E. & Sharan, R., 2015, Research in Computational Molecular Biology - 19th Annual International Conference, RECOMB 2015, Proceedings. Przytycka, T. M. (ed.). p. 243-255 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9029).

    Tel Aviv University

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2013

    A minimum-labeling approach for reconstructing protein networks across multiple conditions

    Mazza, A., Gat-Viks, I., Farhan, H. & Sharan, R., 2013, Algorithms in Bioinformatics - 13th International Workshop, WABI 2013, Proceedings. p. 33-44 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8126 LNBI).

    Tel Aviv University

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
  • 2012

    Approximation algorithms and hardness results for shortest path based graph orientations

    Blokh, D., Segev, D. & Sharan, R., 2012, Combinatorial Pattern Matching - 23rd Annual Symposium, CPM 2012, Proceedings. p. 70-82 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7354 LNCS).

    Tel Aviv University, University of Haifa

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
  • Estimating population size via line graph reconstruction

    Halldórsson, B. V., Blokh, D. & Sharan, R., 2012, Algorithms in Bioinformatics - 12th International Workshop, WABI 2012, Proceedings. p. 69-80 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7534 LNBI).

    Tel Aviv University

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
  • Reconstructing Boolean models of signaling

    Sharan, R. & Karp, R. M., 2012, Research in Computational Molecular Biology - 16th Annual International Conference, RECOMB 2012, Proceedings. p. 261-271 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7262 LNBI).

    Tel Aviv University

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
  • Sign assignment problems on protein networks

    Houri, S. & Sharan, R., 2012, Algorithms in Bioinformatics - 12th International Workshop, WABI 2012, Proceedings. p. 338-345 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7534 LNBI).

    Tel Aviv University

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
  • 2011

    Approximation algorithms for orienting mixed graphs

    Elberfeld, M., Segev, D., Davidson, C. R., Silverbush, D. & Sharan, R., 2011, Combinatorial Pattern Matching - 22nd Annual Symposium, CPM 2011, Proceedings. p. 416-428 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6661 LNCS).

    University of Haifa, Tel Aviv University

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
  • Optimally Orienting Physical Networks

    Silverbush, D., Elberfeld, M. & Sharan, R., 2011, Research in Computational Molecular Biology - 15th Annual International Conference, RECOMB 2011, Proceedings. Bafna, V. & Sahinalp, S. C. (eds.). p. 424-436 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6577 LNBI).

    Tel Aviv University

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Similarity-based methods to predict drug targets, indications and side-effects

    Sharan, R., 2011, Proceedings - 4th International Conference on SImilarity Search and APplications, SISAP 2011. p. 5-6 2 p. (Proceedings - 4th International Conference on SImilarity Search and APplications, SISAP 2011).

    Tel Aviv University

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review