Research output per year
Research output per year
- 25 results
Search results
-
2024
STARdbi: A pipeline and database for insect monitoring based on automated image analysis
Keasar, T., Yair, M., Gottlieb, D., Cabra-Leykin, L. & Keasar, C., 1 May 2024, In: Ecological Informatics. 80, 102521.University of Haifa, Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
Open Access -
2023
Protein Design Using Physics Informed Neural Networks
Omar, S. I., Keasar, C., Ben-Sasson, A. J. & Haber, E., 1 Mar 2023, In: Biomolecules. 13, 3, 457.Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
Open Access -
The Peptidyl-Prolyl cis-trans isomerase, Pin1, associates with Protein Kinase C θ via a critical Phospho-Thr-Pro motif in the V3 regulatory domain
Anto, N. P., Muraleedharan, A., Nath, P. R., Sun, Z., Keasar, C., Livneh, E., Braiman, A., Altman, A., Kong, K. F. & Isakov, N., 8 Mar 2023, In: Frontiers in Immunology. 14, 2023, 1126464.Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
Open Access -
2022
Estimation of model accuracy by a unique set of features and tree-based regressor
Bitton, M. & Keasar, C., 1 Dec 2022, In: Scientific Reports. 12, 1, 14074.Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
Open Access -
Mimetic Neural Networks: A Unified Framework for Protein Design and Folding
Eliasof, M., Boesen, T., Haber, E., Keasar, C. & Treister, E., 1 Jan 2022, In: Frontiers in Bioinformatics. 2, 715006.Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
Open Access -
Predicting mutant outcome by combining deep mutational scanning and machine learning
Sarfati, H., Naftaly, S., Papo, N. & Keasar, C., 1 Jan 2022, In: Proteins: Structure, Function and Bioinformatics. 90, 1, p. 45-57 13 p.Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
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2021
High Throughput Data Acquisition and Deep Learning for Insect Ecoinformatics
Gerovichev, A., Sadeh, A., Winter, V., Bar-Massada, A., Keasar, T. & Keasar, C., 21 May 2021, In: Frontiers in Ecology and Evolution. 9, 600931.Ben-Gurion University of the Negev, University of Haifa
Research output: Contribution to journal › Article › peer-review
Open Access -
Modeling SARS-CoV-2 proteins in the CASP-commons experiment
1 Dec 2021, In: Proteins: Structure, Function and Bioinformatics. 89, 12, p. 1987-1996 10 p.Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
Open Access -
Unraveling the hidden role of a uORF-encoded peptide as a kinase inhibitor of PKCs
Jayaram, D. R., Frost, S., Argov, C., Liju, V. B., Anto, N. P., Muraleedharan, A., Ben-Ari, A., Sinay, R., Smoly, I., Novoplansky, O., Isakov, N., Toiber, D., Keasar, C., Elkabets, M., Yeger-Lotem, E. & Livneh, E., 5 Oct 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 40, e2018899118.Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
Open Access -
2020
Redundancy-weighting the PDB for detailed secondary structure prediction using deep-learning models
Keasar, C. & Sidi, T., 31 Mar 2020, In: Bioinformatics. 36, 12, p. 3733-3738 6 p.Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
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2019
Accurate protein structure prediction by embeddings and deep learning representations
Drori, I., Thaker, D., Srivatsa, A., Jeong, D., Wang, Y., Nan, L., Wu, F., Leggas, D., Lei, J., Lu, W. & Keasar, C., 2019.Ben-Gurion University of the Negev
Research output: Working paper › Preprint
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Loss-functions matter, on optimizing score functions for the estimation of protein models accuracy
Sidi, T. & Keasar, C., 2019.Ben-Gurion University of the Negev
Research output: Working paper › Preprint
Open Access -
Purely structural protein scoring functions using support vector machine and ensemble learning
Mirzaei, S., Sidi, T., Keasar, C. & Crivelli, S., 1 Sep 2019, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16, 5, p. 1515-1523 9 p., 3370671.Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
Open Access -
2018
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12
1 Dec 2018, In: Scientific Reports. 8, 1, 9939.Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
Open Access -
High Quality Prediction of Protein Q8 Secondary Structure by Diverse Neural Network Architectures
Drori, I., Dwivedi, I., Shrestha, P., Wan, J., Wang, Y., He, Y., Mazza, A., Krogh-Freeman, H., Leggas, D., Sandridge, K., Nan, L., Thakoor, K., Joshi, C., Goenka, S., Keasar, C., Pe'er, I. & Keasar, C., 2018.Ben-Gurion University of the Negev
Research output: Working paper › Preprint
File -
Methods for estimation of model accuracy in CASP12
Elofsson, A., Joo, K., Keasar, C., Lee, J., Maghrabi, A. H. A., Manavalan, B., McGuffin, L. J., Ménendez Hurtado, D., Mirabello, C., Pilstål, R., Sidi, T., Uziela, K. & Wallner, B., 1 Mar 2018, In: Proteins: Structure, Function and Bioinformatics. 86, p. 361-373 13 p.Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
Open Access -
2014
Redundancy-weighting for better inference of protein structural features
Yanover, C., Vanetik, N., Levitt, M., Kolodny, R. & Keasar, C., 15 Aug 2014, In: Bioinformatics. 30, 16, p. 2295-2301 7 p.Ben-Gurion University of the Negev, University of Haifa
Research output: Contribution to journal › Article › peer-review
Open Access -
WeFold: A coopetition for protein structure prediction
Khoury, G. A., Liwo, A., Khatib, F., Zhou, H., Chopra, G., Bacardit, J., Bortot, L. O., Faccioli, R. A., Deng, X., He, Y., Krupa, P., Li, J., Mozolewska, M. A., Sieradzan, A. K., Smadbeck, J., Wirecki, T., Cooper, S., Flatten, J., Xu, K., Baker, D., & 9 others, 1 Jan 2014, In: Proteins: Structure, Function and Bioinformatics. 82, 9, p. 1850-1868 19 p.Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
Open Access -
2013
Identification of a colonial chordate histocompatibility gene
Voskoboynik, A., Newman, A. M., Corey, D. M., Sahoo, D., Pushkarev, D., Neff, N. F., Passarelli, B., Koh, W., Ishizuka, K. J., Palmeri, K. J., Dimov, I. K., Keasar, C., Fan, H. C., Mantalas, G. L., Sinha, R., Penland, L., Quake, S. R. & Weissman, I. L., 1 Jan 2013, In: Science. 341, 6144, p. 384-387 4 p.Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
Open Access -
Using protein fragments for searching and data-mining protein databases
Keasar, C. & Kolodny, R., 1 Jan 2013, Artificial Intelligence and Robotics Methods in Computational Biology - Papers from the 2013 AAAI Workshop, Technical Report. AI Access Foundation, p. 14-19 6 p. (AAAI Workshop - Technical Report; vol. WS-13-06).Ben-Gurion University of the Negev, University of Haifa
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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Wefold: A collaborative protein structure prediction experiment
Khoury, G. A., Liwo, A., Khatib, F., Zhou, H., Chopra, G., Bacardit, J., Bortot, L. O., Faccioli, R. A., Deng, X., He, Y., Krupa, P., Li, J., Mozolewska, M., Sieradzan, A., Smadbeck, J., Wirecki, T., Cooper, S., Flatten, J., Xu, K., Baker, D., & 9 others, 1 Jan 2013, Computational Molecular Science and Engineering Forum 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future. p. 182-184 3 p.Ben-Gurion University of the Negev
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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2012
Hierarchical self-organization of cytoskeletal active networks
Gordon, D., Bernheim-Groswasser, A., Keasar, C. & Farago, O., 1 Apr 2012, In: Physical Biology. 9, 2, 026005.Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
Open Access -
Knowledge-based potential for positioning membrane-associated structures and assessing residue-specific energetic contributions
Schramm, C. A., Hannigan, B. T., Donald, J. E., Keasar, C., Saven, J. G., Degrado, W. F. & Samish, I., 9 May 2012, In: Structure. 20, 5, p. 924-935 12 p.Ben-Gurion University of the Negev, Weizmann Institute of Science
Research output: Contribution to journal › Article › peer-review
Open Access -
2011
A library of protein surface patches discriminates between native structures and decoys generated by structure prediction servers
Gamliel, R., Kedem, K., Kolodny, R. & Keasar, C., 6 May 2011, In: Bmc Structural Biology. 11, 20.Ben-Gurion University of the Negev, University of Haifa
Research output: Contribution to journal › Article › peer-review
Open Access -
Structure-based identification of catalytic residues
Yahalom, R., Reshef, D., Wiener, A., Frankel, S., Kalisman, N., Lerner, B. & Keasar, C., 1 Jun 2011, In: Proteins: Structure, Function and Bioinformatics. 79, 6, p. 1952-1963 12 p.Ben-Gurion University of the Negev
Research output: Contribution to journal › Article › peer-review
Open Access