School of Computer Science

2024

Aberrant migration features in primary skin fibroblasts of Huntington's disease patients hold potential for unraveling disease progression using an image based machine learning tool

Gharaba, S., Shalem, A., Paz, O., Muchtar, N., Wolf, L. & Weil, M., Sep 2024, In: Computers in Biology and Medicine. 180, 108970.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

A Framework for Adversarial Streaming Via Differential Privacy and Difference Estimators

Attias, I., Cohen, E., Shechner, M. & Stemmer, U., 1 Jan 2024, (Accepted/In press) In: Algorithmica.

Ben-Gurion University of the Negev, Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

A machine-learning-based alternative to phylogenetic bootstrap

Ecker, N., Huchon, D., Mansour, Y., Mayrose, I. & Pupko, T., 1 Jul 2024, In: Bioinformatics. 40, p. i208-i217

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

A network-based method for associating genes with autism spectrum disorder

Zadok, N., Ast, G. & Sharan, R., 2024, In: Frontiers in Bioinformatics. 4, 1295600.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

An Infinite Needle in a Finite Haystack: Finding Infinite Counter-Models in Deductive Verification

Elad, N., Padon, O. & Shoham, S., 5 Jan 2024, In: Proceedings of the ACM on Programming Languages. 8, 33.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Batch correction of single-cell sequencing data via an autoencoder architecture

Danino, R., Nachman, I. & Sharan, R., 2024, In: Bioinformatics Advances. 4, 1, vbad186.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Calcium regulation of the Arabidopsis Na⁺/K⁺transporter HKT1;1 improves seed germination under salt stress

Chandran, A. E. J., Finkler, A., Hait, T. A., Kiere, Y., David, S., Pasmanik-Chor, M. & Shkolnik, D., Mar 2024, In: Plant Physiology. 194, 3, p. 1834-1852 19 p.

The Hebrew University of Jerusalem, Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Characterizing dog cognitive aging using spontaneous problem-solving measures: development of a battery of tests from the Dog Aging Project

2024, (Accepted/In press) In: GeroScience.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Chronic Lymphocytic Leukemia (CLL)-Derived Extracellular Vesicles Educate Endothelial Cells to Become IL-6-Producing, CLL-Supportive Cells

Uziel, O., Lipshtein, L., Sarsor, Z., Beery, E., Bogen, S., Lahav, M., Regev, A., Kliminski, V., Sharan, R., Gervits, A., Signorini, L. F., Shimony, S., Raanani, P. & Rozovski, U., Jul 2024, In: Biomedicines. 12, 7, 1381.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Classification of depression tendency from gaze patterns during sentence reading

Kobo, O., Meltzer-Asscher, A., Berant, J. & Schonberg, T., Jul 2024, In: Biomedical Signal Processing and Control. 93, 106015.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

CLIP-Flow: Decoding images encoded in CLIP space

Ma, H., Li, M., Yang, J., Patashnik, O., Lischinski, D., Cohen-Or, D. & Huang, H., 2024, (Accepted/In press) In: Computational Visual Media.

Tel Aviv University, The Hebrew University of Jerusalem

Research output: Contribution to journal › Article › peer-review

Open Access

Clustering the cortical laminae: in vivo parcellation

Shamir, I., Assaf, Y. & Shamir, R., Mar 2024, In: Brain Structure and Function. 229, 2, p. 443-458 16 p.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Compositional semantics for shared-variable concurrency

Svyatlovskiy, M., Mermelstein, S. & Lahav, O., 20 Jun 2024, In: Proceedings of the ACM on Programming Languages. 8, 169.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Diet-omics in the Study of Urban and Rural Crohn disease Evolution (SOURCE) cohort

Braun, T., Feng, R., Amir, A., Levhar, N., Shacham, H., Mao, R., Toren, I., Abu-Saad, K., Zhuo, S., Efroni, G., Malik, A., Picard, O., Yavzori, M., Agranovich, B., Liu, T. C., Stappenbeck, T. S., Denson, L., Kalter-Leibovici, O., Gottlieb, E., Borenstein, E., & 6 othersElinav, E., Chen, M., Ben-Horin, S., Haberman, Y., Hadar, R. & Algavi, Y., 4 May 2024, In: Nature Communications. 15, 1, p. 3764 3764.

Weizmann Institute of Science, Tel Aviv University, Technion - Israel Institute of Technology

Research output: Contribution to journal › Article › peer-review

Open Access

Distributed computing with the cloud

Afek, Y., Giladi, G. & Patt-Shamir, B., Mar 2024, In: Distributed Computing. 37, 1, p. 1-18 18 p.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Dynamic Connectivity in Disk Graphs

Baumann, A., Kaplan, H., Klost, K., Knorr, K., Mulzer, W., Roditty, L. & Seiferth, P., Jan 2024, In: Discrete and Computational Geometry. 71, 1, p. 214-277 64 p.

Tel Aviv University, Bar-Ilan University

Research output: Contribution to journal › Article › peer-review

Open Access

D’or: deep orienter of protein–protein interaction networks

Pirak, D. & Sharan, R., 1 Jul 2024, In: Bioinformatics. 40, 7, btae355.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Environmental factors influencing red knot (Calidris canutus islandica) departure times of relocation flights within the non-breeding period

Gobbens, E., Beardsworth, C. E., Dekinga, A., ten Horn, J., Toledo, S., Nathan, R. & Bijleveld, A. I., 1 Mar 2024, In: Ecology and Evolution. 14, 3, e10954.

The Hebrew University of Jerusalem, Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Evaluating the Ripple Effects of Knowledge Editing in Language Models

Cohen, R., Biran, E., Yoran, O., Globerson, A. & Geva, M., 2024, In: Transactions of the Association for Computational Linguistics. 12, p. 283-298 16 p.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Exploring the Stylistic Uniqueness of the Priestly Source in Genesis and Exodus Through a Statistical/Computational Lens

Bühler, A., Yoffe, G., Dershowitz, N., Piasetzky, E., Finkelstein, I., Römer, T. & Sober, B., 4 Jun 2024, In: Zeitschrift fur die Alttestamentliche Wissenschaft. 136, 2, p. 165-190 26 p.

Tel Aviv University, University of Haifa, The Hebrew University of Jerusalem

Research output: Contribution to journal › Article › peer-review

Open Access

Finding strong components using depth-first search

Tarjan, R. E. & Zwick, U., Jun 2024, In: European Journal of Combinatorics. 119, 103815.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Genetic and behavioural factors affecting interpopulation colour pattern variation in two congeneric chameleon species

Keren-Rotem, T., Main, D. C., Barocas, A., Donaire-Barroso, D., Haddas-Sasson, M., Vila, C., Shaharabany, T., Wolf, L., Tolley, K. A. & Geffen, E., 17 Jan 2024, In: Royal Society Open Science. 11, 1, 231554.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Genome wide association study and genomic risk prediction of age related macular degeneration in Israel

Grunin, M., Triffon, D., Beykin, G., Rahmani, E., Schweiger, R., Tiosano, L., Khateb, S., Hagbi-Levi, S., Rinsky, B., Munitz, R., Winkler, T. W., Heid, I. M., Halperin, E., Carmi, S. & Chowers, I., Dec 2024, In: Scientific Reports. 14, 1, 13034.

Tel Aviv University, The Hebrew University of Jerusalem

Research output: Contribution to journal › Article › peer-review

Open Access

Harnessing the flexibility of neural networks to predict dynamic theoretical parameters underlying human choice behavior

Ger, Y., Nachmani, E., Wolf, L. & Shahar, N., 1 Jan 2024, In: PLoS Computational Biology. 20, 1, e1011678.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

How can we achieve more accurate reporting of average dog lifespan?

Sep 2024, In: Journal of the American Veterinary Medical Association. 262, 9

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

interFLOW: maximum flow framework for the identification of factors mediating the signaling convergence of multiple receptors

Sheinin, R., Salomon, K., Yeini, E., Dulberg, S., Kaminitz, A., Satchi-Fainaro, R., Sharan, R. & Madi, A., Dec 2024, In: npj Systems Biology and Applications. 10, 1, 66.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Interpolation of microbiome composition in longitudinal data sets

Peleg, O. & Borenstein, E., 11 Sep 2024, In: mBio. 15, 9, p. e0115024

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Intersection Searching amid Tetrahedra in Four Dimensions

Ezra, E. & Sharir, M., 2024, (Accepted/In press) In: Discrete and Computational Geometry.

Bar-Ilan University, Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Multi-modal contrastive learning of subcellular organization using DICE

Nasser, R., Schaffer, L. V., Ideker, T. & Sharan, R., 1 Sep 2024, In: Bioinformatics. 40, 2, p. ii105-ii110

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Multi-omic integration of microbiome data for identifying disease-associated modules

Muller, E., Shiryan, I. & Borenstein, E., Dec 2024, In: Nature Communications. 15, 1, 2621.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

On reverse shortest paths in geometric proximity graphs

Agarwal, P. K., Katz, M. J. & Sharir, M., 1 Feb 2024, In: Computational Geometry: Theory and Applications. 117, 102053.

Ben-Gurion University of the Negev, Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Optimal Two-Dimensional Reed–Solomon Codes Correcting Insertions and Deletions

Con, R., Shpilka, A. & Tamo, I., 1 Jul 2024, In: IEEE Transactions on Information Theory. 70, 7, p. 5012-5016 5 p., 10497143.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Plasmids in the human gut reveal neutral dispersal and recombination that is overpowered by inflammatory diseases

Zorea, A., Pellow, D., Levin, L., Pilosof, S., Friedman, J., Shamir, R. & Mizrahi, I., 1 Dec 2024, In: Nature Communications. 15, 1, 3147.

Ben-Gurion University of the Negev, The Hebrew University of Jerusalem, Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Quantum time/memory/data tradeoff attacks

Dunkelman, O., Keller, N., Ronen, E. & Shamir, A., Jan 2024, In: Designs, Codes, and Cryptography. 92, 1, p. 159-177 19 p.

University of Haifa, Bar-Ilan University, Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Relative dispersion ratios following fecal microbiota transplant elucidate principles governing microbial migration dynamics

Algavi, Y. M. & Borenstein, E., Dec 2024, In: Nature Communications. 15, 1, 4447.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Repairing Reed-Solomon Codes over Prime Fields via Exponential Sums

Con, R., Shutty, N., Tamo, I. & Wootters, M., 2024, (Accepted/In press) In: IEEE Transactions on Information Theory. p. 1 1 p.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

SENS: Part-Aware Sketch-based Implicit Neural Shape Modeling

Binninger, A., Hertz, A., Sorkine-Hornung, O., Cohen-Or, D. & Giryes, R., May 2024, In: Computer Graphics Forum. 43, 2, e15015.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Shell stand: Stable thin shell models for 3D fabrication

Xing, Y., Wang, X., Lu, L., Sharf, A., Cohen-Or, D. & Tu, C., 1 Aug 2024, In: Computational Visual Media. 10, 4, p. 643-657 15 p.

Tel Aviv University, Ben-Gurion University of the Negev

Research output: Contribution to journal › Article › peer-review

Open Access

Spatial memory obviates following behaviour in an information centre of wild fruit bats

Lourie, E., Shamay, T., Toledo, S. & Nathan, R., 4 Sep 2024, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 379, 1912, 20240060.

The Hebrew University of Jerusalem, Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

Split-and-Fit: Learning B-Reps via Structure-Aware Voronoi Partitioning

Liu, Y., Chen, J., Pan, S., Cohen-Or, D., Zhang, H. & Huang, H., 19 Jul 2024, In: ACM Transactions on Graphics. 43, 4, 108.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access

State of the Art on Diffusion Models for Visual Computing

Po, R., Yifan, W., Golyanik, V., Aberman, K., Barron, J. T., Bermano, A., Chan, E., Dekel, T., Holynski, A., Kanazawa, A., Liu, C. K., Liu, L., Mildenhall, B., Nießner, M., Ommer, B., Theobalt, C., Wonka, P. & Wetzstein, G., May 2024, In: Computer Graphics Forum. 43, 2, e15063.

Weizmann Institute of Science, Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Sticky Links: Encoding Quantitative Data of Graph Edges

Lu, M., Zeng, X., Lanir, J., Sun, X., Li, G., Cohen-Or, D. & Huang, H., 1 Jun 2024, In: IEEE Transactions on Visualization and Computer Graphics. 30, 6, p. 2968-2980 13 p.

Tel Aviv University, University of Haifa

Research output: Contribution to journal › Article › peer-review

The impact of extensive intraductal component (EIC) on the genomic risk of recurrence in early hormone receptor positive breast cancer

Bar, Y., Bar, K., Feldman, D., Dror, J. B., Shahoha, M., Lerner, S., Shachar, S. S., Weiss-Meilik, A., Dershowitz, N., Wolf, I. & Sonnenblick, A., Oct 2024, In: Breast. 77, 103777.

Tel Aviv University

Research output: Contribution to journal › Article › peer-review

Open Access