A robust type I interferon gene signature from blood RNA defines quantitative but not qualitative differences between three major IFN beta drugs in the treatment of multiple sclerosis

Daniel Harari, Irit Orr, Ron Rotkopf, SE Baranzini, Gideon Schreiber

نتاج البحث: نشر في مجلةمقالةمراجعة النظراء

ملخص

We analysed gene expression microarray data from whole blood samples from 228 multiple sclerosis (MS) patients either untreated or treated with one of three alternative commonly used interferon beta (IFN beta) disease modifying drugs: Avonex(A (R)) (x1 weekly), Betaseron(A (R)) (every second day) or Rebif(A (R)) (x3 weekly). Patient injections were not timed to coordinate sample collections, thus providing a global transcriptomic profile for each population of patients studied. Three hundred and fifty one genes were significantly differentially expressed by at least one of the IFN beta drugs. Despite the different drug sources with distinct injection and dosage protocols, a striking similarity was found in the identity and functional classes of the differentially expressed genes induced. Using the 25 most-upregulated genes, we defined a robust IFN beta gene expression signature that quantifies the IFN activation state per blood sample collected irrespective of the type of IFN beta therapy. This 25-gene signature also defined basal IFN activation states among untreated MS patients, which differed among individuals but remained relatively constant per patient with time. The maximum drug-induced IFN-activation state was similar for all three drugs despite a 1.7-2.0-fold diminished average effect for Avonex. This and a more erratic effect of Avonex per patient across longitudinal measurements is likely a result of its reduced injection frequency. In summary, we have defined a robust blood-derived type I IFN gene signature from MS patients. This signature could potentially serve to generically quantify the systemic Type I IFN activation status for any other clinical manifestation, inclusive of other autoimmune diseases.
اللغة الأصليةالإنجليزيّة
الصفحات (من إلى)3192-3205
عدد الصفحات14
دوريةHuman Molecular Genetics
مستوى الصوت24
رقم الإصدار11
تاريخ مبكر على الإنترنت26 فبراير 2015
المعرِّفات الرقمية للأشياء
حالة النشرنُشِر - 1 يونيو 2015

بصمة

أدرس بدقة موضوعات البحث “A robust type I interferon gene signature from blood RNA defines quantitative but not qualitative differences between three major IFN beta drugs in the treatment of multiple sclerosis'. فهما يشكلان معًا بصمة فريدة.

قم بذكر هذا